Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 0.0e+00 1199.9 660 100.0
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.2e-309 1065.1 667 88.5
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.6e-302 1041.6 665 87.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 7.9e-291 1003.4 665 85.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.6e-259 898.3 664 75.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.1e-252 876.7 663 74.1
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.3e-248 863.2 663 73.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.3e-245 853.2 668 72.6
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-244 850.1 669 72.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.0e-242 843.6 669 72.2
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.3e-242 842.4 669 72.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 9.8e-241 837.0 665 70.2
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.2e-240 835.9 667 71.2
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.9e-240 835.5 665 73.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.4e-239 831.2 672 71.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 7.0e-239 830.9 664 70.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.2e-238 830.1 663 72.2
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.6e-238 828.2 663 72.5
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 7.8e-238 827.4 661 72.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.5e-236 823.2 666 71.8
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.3e-236 822.0 665 71.4
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 9.5e-236 820.5 665 71.3
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-235 819.7 660 72.0
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.8e-235 818.9 663 70.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 6.2e-235 817.8 659 72.4
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 4.0e-234 815.1 668 69.0
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.2e-233 813.5 663 71.3
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.8e-233 810.4 664 70.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.3e-232 810.1 665 68.6
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-231 806.6 665 69.8
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.6e-230 801.6 665 69.8
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.6e-229 797.7 665 69.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 6.6e-229 797.7 661 70.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.1e-228 797.0 665 69.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.5e-228 796.6 663 70.1
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 9.5e-228 793.9 665 68.9
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.2e-225 786.9 674 68.2
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.5e-225 786.6 660 69.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.4e-224 781.2 665 68.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.4e-223 780.0 664 69.0
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 5.4e-223 778.1 665 69.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 5.4e-223 778.1 665 69.6
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 3.9e-221 771.9 659 68.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 6.2e-219 764.6 659 65.1
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 3.1e-218 762.3 665 68.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 8.9e-218 760.8 674 63.9
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.7e-216 756.5 640 66.7
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 6.4e-216 754.6 662 68.3
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 7.8e-214 747.7 663 65.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 6.6e-213 744.6 658 64.6
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 8.6e-213 744.2 671 65.7
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.5e-212 743.4 660 65.3
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 7.3e-212 741.1 660 65.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 6.2e-211 738.0 669 63.7
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-210 735.7 676 66.3
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.2e-209 733.8 660 65.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.5e-209 733.4 660 64.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 8.4e-208 727.6 659 63.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-207 727.2 656 65.2
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.4e-207 726.9 661 63.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 3.3e-204 715.7 661 61.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.8e-203 712.6 661 61.7
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.8e-203 712.6 661 61.7
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-201 706.4 663 62.3
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.4e-200 701.4 672 64.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.7e-198 696.0 672 63.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 6.0e-198 694.9 670 63.0
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-197 693.7 659 61.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.3e-196 689.1 677 59.7
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 7.4e-196 688.0 665 59.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.2e-195 684.9 660 62.3
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.2e-195 684.9 662 61.6
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-194 683.7 618 66.0
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 9.0e-194 681.0 664 60.8
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.6e-193 679.5 668 62.3
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 5.8e-193 678.3 658 59.6
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 9.9e-193 677.6 665 58.6
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 6.4e-192 674.9 665 58.9
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.4e-192 674.5 659 59.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.2e-191 672.5 666 58.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.7e-190 669.5 670 61.9
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.7e-190 669.5 675 58.5
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 3.5e-190 669.1 675 59.1
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.0e-189 667.5 660 60.6
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.0e-189 666.0 665 57.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-188 663.3 665 57.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.1e-187 659.8 661 60.7
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 2.1e-187 659.8 674 58.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.8e-187 659.4 674 58.0
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 8.2e-187 657.9 674 58.2
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-186 657.5 659 61.6
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.8e-186 656.8 663 59.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 2.4e-186 656.4 664 59.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.4e-186 656.4 663 60.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 6.9e-186 654.8 660 60.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.0e-185 653.3 666 61.4
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 4.5e-185 652.1 679 57.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.7e-184 650.2 662 57.7
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.9e-184 649.4 661 63.2
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 9.3e-183 644.4 664 58.4
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 6.0e-182 641.7 668 59.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.3e-181 640.6 545 68.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 6.7e-181 638.3 660 57.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.5e-180 636.3 666 61.1
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.4e-180 634.8 664 58.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 9.0e-178 627.9 660 60.0
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.2e-176 623.2 660 58.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.9e-176 622.9 658 55.5
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.2e-174 617.5 679 54.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.3e-173 614.0 665 54.9
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-173 614.0 665 54.9
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.7e-173 611.3 547 65.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.7e-173 611.3 547 65.6
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-172 610.9 671 57.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.3e-172 609.4 661 60.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.6e-171 607.1 664 55.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 8.2e-171 604.7 671 56.0
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.4e-170 604.0 660 55.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.8e-170 603.6 670 54.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.3e-170 602.1 680 55.9
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.0e-169 600.1 662 57.3
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.0e-168 597.8 664 58.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.5e-168 594.7 658 57.1
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-167 594.3 669 53.8
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.4e-167 594.0 673 53.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.2e-166 590.9 660 55.2
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 6.7e-165 585.1 675 52.9
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.3e-164 582.8 658 53.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.1e-162 574.7 669 52.8
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.6e-161 573.2 669 55.9
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.6e-158 562.8 663 52.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.4e-157 560.8 658 54.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.2e-157 558.9 652 54.6
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.4e-156 555.1 662 53.3
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 7.4e-156 555.1 677 51.3
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 6.3e-155 552.0 682 52.5
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.3e-154 548.9 677 52.6
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-152 544.3 680 52.8
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.7e-152 543.9 662 51.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-146 523.9 652 54.1
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.9e-144 516.5 677 51.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 5.0e-144 515.8 673 48.4
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.6e-142 509.6 667 48.7
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.7e-142 509.2 669 50.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 5.7e-140 502.3 660 50.9
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.9e-135 487.3 622 48.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.5e-135 486.9 543 54.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.8e-133 480.7 404 70.8
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 5.2e-133 479.2 411 69.1
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.0e-125 454.9 431 63.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 4.9e-123 446.0 408 64.7
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.5e-121 439.9 616 46.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 3.3e-119 433.3 662 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 8.0e-118 428.7 666 44.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.2e-117 426.0 675 45.8
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.4e-90 337.4 539 43.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.0e-88 330.5 671 39.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.9e-85 319.3 551 43.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 7.1e-82 309.3 313 55.9
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.5e-76 290.0 229 69.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 8.4e-67 259.2 486 39.1
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 7.1e-66 256.1 655 36.2
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.2e-60 238.8 643 35.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.6e-49 201.8 273 42.1
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.0e-43 182.6 217 58.5
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-32 145.6 113 60.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.1e-29 134.4 127 66.9
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-25 122.5 137 53.3
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.0e-24 119.4 77 76.6
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.8e-24 116.3 109 52.3
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 7.7e-20 103.2 79 68.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.5e-18 96.3 78 65.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 9.5e-18 96.3 128 39.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.8e-17 94.7 61 68.9
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.5e-15 89.0 74 60.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.5e-10 71.6 46 67.4
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.3e-10 70.9 464 26.1
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 3.6e-09 67.8 105 49.5
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 7.5e-07 60.1 393 23.7
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 1.3e-06 59.3 131 46.6
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.9e-06 57.4 73 47.9


User provided reference genes

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