Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 8.9e-90 333.6 166 100.0
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.6e-36 154.8 91 84.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.6e-30 136.7 107 65.4
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 9.0e-26 120.9 106 60.4
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.2e-23 112.5 95 60.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.9e-20 103.2 95 55.8
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.3e-19 100.5 138 40.6
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 4.8e-19 98.6 108 50.0
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 6.3e-19 98.2 95 51.6
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 6.3e-19 98.2 95 52.6
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-18 97.4 95 51.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.4e-18 97.1 96 53.1
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.8e-18 96.7 95 50.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.4e-18 96.3 95 49.5
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.4e-18 96.3 95 50.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.3e-18 95.1 95 50.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 9.0e-18 94.4 96 51.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 9.0e-18 94.4 96 51.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.0e-17 93.2 95 47.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.4e-17 92.4 96 53.1
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 3.4e-17 92.4 95 49.5
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 4.5e-17 92.0 105 43.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 5.9e-17 91.7 96 50.0
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 7.7e-17 91.3 96 49.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 7.7e-17 91.3 96 45.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.0e-16 90.9 95 47.4
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.7e-16 90.1 79 54.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.2e-16 89.7 90 50.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.2e-16 89.7 96 49.0
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 5.0e-16 88.6 95 45.3
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 8.5e-16 87.8 89 52.8
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.1e-15 87.4 96 47.9
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.9e-15 86.7 96 46.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.2e-15 85.5 109 45.9
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.2e-15 85.5 95 46.3
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 7.2e-15 84.7 108 46.3
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 7.2e-15 84.7 95 46.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.2e-14 84.0 109 43.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.7e-14 82.8 109 44.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.6e-14 82.4 96 43.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.6e-14 82.4 96 43.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 3.6e-14 82.4 92 47.8
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.6e-14 82.0 96 43.8
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 4.6e-14 82.0 124 41.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 4.6e-14 82.0 107 42.1
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.6e-14 82.0 60 65.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 4.6e-14 82.0 92 45.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 6.1e-14 81.6 96 42.7
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.1e-14 81.6 95 44.2
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 7.9e-14 81.3 96 42.7
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.4e-13 80.5 96 42.7
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.3e-13 79.7 82 47.6
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.3e-13 79.7 96 47.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.3e-13 79.7 96 42.7
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.9e-13 79.0 109 44.0
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.9e-13 79.0 95 45.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 6.7e-13 78.2 91 48.4
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 6.7e-13 78.2 96 44.8
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 8.8e-13 77.8 51 68.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.5e-12 77.0 105 40.0
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.5e-12 77.0 105 40.0
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 3.3e-12 75.9 91 44.0
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 3.3e-12 75.9 96 41.7
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 4.3e-12 75.5 104 42.3
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.7e-12 75.1 102 42.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 7.4e-12 74.7 96 41.7
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.7e-12 74.3 102 41.2
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.3e-11 73.9 105 43.8
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-11 73.6 96 38.5
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.2e-11 73.2 102 42.2
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.2e-11 73.2 96 38.5
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.8e-11 72.8 113 39.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.8e-11 72.8 102 41.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.7e-11 72.4 102 40.2
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 4.8e-11 72.0 113 38.9
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.8e-11 72.0 96 38.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.8e-11 72.0 96 38.5
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 4.8e-11 72.0 104 40.4
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 6.3e-11 71.6 102 41.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 6.3e-11 71.6 89 43.8
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 6.3e-11 71.6 99 38.4
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 8.2e-11 71.2 96 38.5
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 8.2e-11 71.2 96 39.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.8e-10 70.1 92 39.1
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 2.4e-10 69.7 99 38.4
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.1e-10 69.3 135 32.6
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.1e-10 69.3 113 38.1
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.1e-10 69.3 80 46.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 6.9e-10 68.2 96 42.7
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 9.1e-10 67.8 96 36.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 2.0e-09 66.6 96 41.7
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.0e-09 66.6 96 36.5
Actinidia08076 Actinidia chinensis HOM05D000623 ORTHO05D005109 2.6e-09 66.2 42 69.0
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.4e-09 65.9 89 40.4
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.7e-09 64.7 135 31.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 7.7e-09 64.7 96 41.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.8e-08 62.4 91 36.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.5e-08 61.6 96 36.5
Sabra08G0022800 Salix brachista HOM05D000623 ORTHO05D005109 8.5e-08 61.2 29 89.7
COL.COLO4_20385 Corchorus olitorius HOM05D000623 ORTHO05D005109 1.4e-07 60.5 30 86.7
Potri.010G227901 Populus trichocarpa HOM05D000623 ORTHO05D005109 1.4e-07 60.5 28 96.4
Thecc.02G210300 Theobroma cacao HOM05D000623 ORTHO05D005109 1.4e-07 60.5 30 86.7
ClCG08G010090 Citrullus lanatus HOM05D000623 ORTHO05D005109 1.9e-07 60.1 30 83.3
Duzib251G0180 Durio zibethinus HOM05D000623 ORTHO05D005109 3.2e-07 59.3 30 83.3
CANSAT01G0094 Cannabis sativa HOM05D000623 ORTHO05D005109 4.2e-07 58.9 30 83.3
Gohir.A05G310800 Gossypium hirsutum HOM05D000623 ORTHO05D005109 4.2e-07 58.9 30 83.3
Gohir.D05G311600 Gossypium hirsutum HOM05D000623 ORTHO05D005109 4.2e-07 58.9 30 83.3
Gorai.009G332700 Gossypium raimondii HOM05D000623 ORTHO05D005109 4.2e-07 58.9 30 83.3
QL03p053653 Quercus lobata HOM05D000623 ORTHO05D005109 4.2e-07 58.9 30 83.3
Glyma.05G146900 Glycine max HOM05D000623 ORTHO05D005109 7.2e-07 58.2 30 80.0
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.2e-07 58.2 98 34.7
Lj4g0006288 Lotus japonicus HOM05D000623 ORTHO05D005109 9.4e-07 57.8 30 80.0
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 9.4e-07 57.8 72 43.1
Prupe.1G227200 Prunus persica HOM05D000623 ORTHO05D005109 9.4e-07 57.8 30 80.0
Sed0010011 Sechium edule HOM05D000623 ORTHO05D005109 9.4e-07 57.8 30 80.0
Gohir.A03G126900 Gossypium hirsutum HOM05D000623 ORTHO05D005109 1.2e-06 57.4 30 80.0
Gohir.D02G150300 Gossypium hirsutum HOM05D000623 ORTHO05D005109 1.2e-06 57.4 30 80.0
Gorai.005G168600 Gossypium raimondii HOM05D000623 ORTHO05D005109 1.2e-06 57.4 30 80.0
Duzib268G0113 Durio zibethinus HOM05D000623 ORTHO05D005109 1.6e-06 57.0 30 80.0
AL2G25980 Arabidopsis lyrata HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
BcaB05g24283 Brassica carinata HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
BcaC03g14840 Brassica carinata HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
A02p14220 Brassica napus HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
C02p23010 Brassica napus HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
BolC2t08445H Brassica oleracea HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
Carub.0002s1374 Capsella rubella HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
MELO3C011456.2 Cucumis melo HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 80.0
CsaV3_6G032250 Cucumis sativus L. HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 80.0
Thhalv10018590m.g Eutrema salsugineum HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
Glyma.08G103800 Glycine max HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
Phvul.L001646 Phaseolus vulgaris HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
Phvul.L001680 Phaseolus vulgaris HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 76.7
TAR629G0601 Trochodendron aralioides HOM05D000623 ORTHO05D005109 2.1e-06 56.6 30 80.0
Eucgr.B03487 Eucalyptus grandis HOM05D000623 ORTHO05D005109 2.7e-06 56.2 30 80.0
Eucgr.F01298 Eucalyptus grandis HOM05D000623 ORTHO05D005109 2.7e-06 56.2 30 80.0
Potri.008G034500 Populus trichocarpa HOM05D000623 ORTHO05D005109 2.7e-06 56.2 29 79.3
Ciclev10031600m.g Citrus clementina HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 76.7
Haze_12400 Corylus avellana HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 80.0
Haze_12402 Corylus avellana HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 80.0
Medtr8g080490 Medicago truncatula HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 73.3
TPR.G17082 Trifolium pratense HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 73.3
TWI36G0993 Tripterygium wilfordii HOM05D000623 ORTHO05D005109 3.6e-06 55.8 30 76.7
AT1G67410 Arabidopsis thaliana HOM05D000623 ORTHO05D005109 4.7e-06 55.5 30 76.7
Cfa009327 Carpinus fangiana HOM05D000623 ORTHO05D005109 4.7e-06 55.5 30 76.7
Lj6A825T66 Lonicera japonica HOM05D000623 ORTHO05D005109 4.7e-06 55.5 30 76.7
Sp5g22340 Schrenkiella parvula HOM05D000623 ORTHO05D005109 4.7e-06 55.5 30 73.3
Aa31sc377G60 Aethionema arabicum HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 73.3
Solyc03g044880.4 Solanum lycopersicum HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 80.0
Sopen03g009170 Solanum pennellii HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 80.0
PGSC0003DMG400022917 Solanum tuberosum HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 80.0
THA.LOC104807568 Tarenaya hassleriana HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 73.3
VMungo0251G1862 Vigna mungo HOM05D000623 ORTHO05D005109 6.1e-06 55.1 30 76.7
arahy.Tifrunner.gnm1.ann1.CZS8FP Arachis hypogaea HOM05D000623 ORTHO05D005109 7.9e-06 54.7 30 73.3
arahy.Tifrunner.gnm1.ann1.VF7QK5 Arachis hypogaea HOM05D000623 ORTHO05D005109 7.9e-06 54.7 30 73.3
Manes.12G012500 Manihot esculenta HOM05D000623 ORTHO05D005109 7.9e-06 54.7 30 73.3


User provided reference genes

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