Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 0.0e+00 1880.9 946 100.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1266.5 1035 69.1
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1167.1 1071 60.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 0.0e+00 1125.9 1065 58.9
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.7e-259 897.9 856 58.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.1e-229 800.8 1040 47.6
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.5e-210 737.3 999 45.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 7.8e-199 698.4 1084 42.6
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 7.3e-197 691.8 1082 42.1
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 4.9e-193 679.1 1026 42.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.1e-192 677.9 1094 41.9
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.8e-188 663.3 1058 41.8
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 5.8e-186 655.6 1073 40.9
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.7e-185 654.1 1074 41.1
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.4e-184 650.2 1055 41.5
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 4.0e-179 632.9 1048 39.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.2e-177 627.1 1030 40.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.2e-176 622.9 1030 40.9
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 7.1e-176 622.1 1042 40.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 7.1e-176 622.1 1125 38.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.9e-173 614.0 1127 37.7
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 4.3e-165 586.3 1011 40.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.9e-161 572.8 1037 38.6
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 6.5e-161 572.4 1064 38.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.8e-158 564.3 1036 38.2
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 3.1e-155 553.5 1047 38.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-146 525.0 1056 36.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 3.8e-145 520.0 1049 37.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 4.2e-144 516.5 1057 36.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.1e-143 514.2 1053 36.2
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.8e-140 503.8 1076 36.2
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.8e-140 503.8 1033 35.1
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.9e-138 496.1 1044 34.2
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.3e-137 495.0 1066 35.3
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.7e-137 494.6 1009 35.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.5e-136 490.7 1023 35.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.2e-136 490.0 1003 35.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.6e-135 488.0 1062 35.5
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.1e-135 487.6 1026 35.5
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.2e-132 477.6 1062 35.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.4e-131 474.9 1051 34.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.0e-129 466.5 951 37.9
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.5e-128 464.2 1048 32.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.4e-126 458.4 949 38.3
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 8.8e-126 455.7 1046 33.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.0e-125 454.5 942 35.4
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.5e-125 452.6 954 37.7
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 9.7e-125 452.2 1168 31.6
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.8e-123 448.0 1053 34.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.4e-123 447.6 1004 33.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.1e-123 447.2 1033 33.0
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 9.1e-123 445.7 1099 32.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.7e-122 444.1 1007 34.1
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.7e-122 444.1 995 33.4
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 4.5e-122 443.4 823 38.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-121 442.2 1097 32.4
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.3e-121 441.8 1015 33.3
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.1e-120 438.7 1033 34.3
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-120 438.0 1028 32.6
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.0e-118 432.2 1150 31.7
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 8.3e-116 422.5 575 44.5
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.1e-115 422.2 1016 35.2
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-115 421.8 1026 32.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.4e-115 419.9 1152 30.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.0e-114 417.9 939 32.3
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.7e-114 417.5 1025 33.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.2e-113 414.5 1047 31.6
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.9e-112 411.4 1017 33.0
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 2.3e-110 404.4 1012 32.8
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 3.7e-108 397.1 1018 31.8
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 7.8e-106 389.4 1136 30.4
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.0e-105 389.0 1039 32.4
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.8e-103 380.9 950 33.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.6e-101 374.4 974 31.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.7e-101 373.2 936 32.5
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.3e-100 372.1 958 33.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.9e-100 370.9 1016 30.6
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.2e-98 365.5 971 33.4
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.3e-97 361.3 1018 30.9
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 5.0e-97 360.1 883 33.1
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.7e-92 344.0 726 36.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.4e-91 340.1 992 30.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.3e-89 334.7 946 31.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.5e-85 322.0 937 32.2
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.0e-85 321.6 995 29.8
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 8.3e-84 316.2 936 31.7
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 3.0e-81 307.8 849 33.0
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 3.3e-80 304.3 849 32.7
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.8e-79 301.2 849 32.6
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 5.8e-77 293.5 410 45.4
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.4e-70 271.6 682 33.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.4e-67 261.5 829 30.5
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.6e-66 257.3 1027 25.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.3e-63 249.2 737 30.5
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.8e-63 248.1 652 32.5
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.0e-57 229.6 253 51.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-56 224.2 505 33.3
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 4.9e-52 210.7 654 29.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.9e-51 208.8 614 30.5
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 5.5e-51 207.2 566 31.6
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.7e-49 199.9 752 28.2
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-48 199.1 918 28.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-48 198.4 324 38.3
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.6e-48 196.4 473 33.0
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.7e-47 194.5 528 32.2
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.0e-46 191.0 740 28.8
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.0e-45 188.7 528 30.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.0e-45 188.7 684 28.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.0e-41 174.9 298 36.2
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 7.4e-40 170.2 963 25.5
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.3e-39 167.2 707 26.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.5e-35 154.1 745 25.8
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 9.3e-35 153.3 320 33.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.6e-34 151.4 694 26.7
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.0e-33 149.8 182 47.3
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-33 148.3 176 49.4
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.5e-32 145.2 219 41.6
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.7e-32 144.1 159 47.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 9.1e-30 136.7 200 42.5
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.2e-28 132.1 157 47.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 6.5e-28 130.6 158 48.1
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.4e-27 129.4 134 50.0
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.5e-27 128.6 169 42.0
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 3.6e-26 124.8 358 28.2
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 6.1e-26 124.0 746 25.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.9e-25 121.3 169 44.4
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-24 119.8 163 44.2
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.2e-23 115.5 126 46.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.1e-22 111.7 316 27.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.2e-21 109.8 127 46.5
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.2e-19 101.7 327 27.5
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.5e-19 100.9 657 24.4
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 7.2e-19 100.5 314 27.7
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.0e-17 96.7 448 27.2
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.1e-14 84.7 651 23.0
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.9e-12 78.6 61 55.7
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 3.8e-12 78.2 651 22.7
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.5e-11 75.5 84 50.0
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.2e-11 75.1 58 63.8
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.2e-10 73.2 475 24.2
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 2.1e-10 72.4 175 33.7
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.4e-09 69.7 373 25.7
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 2.0e-08 65.9 237 29.1
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.7e-07 61.6 63 49.2
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.3e-06 57.8 69 34.8


User provided reference genes

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