Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1698.3 830 100.0
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1591.2 830 94.1
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1504.6 832 88.9
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1328.5 839 77.1
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1323.5 833 77.1
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1322.0 835 77.5
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1318.1 835 77.6
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1314.3 840 76.9
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1313.9 817 77.5
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1312.0 825 77.8
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1310.8 832 76.4
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1309.3 836 75.7
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1308.9 825 77.5
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1305.4 839 76.0
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1304.7 835 75.3
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1304.3 839 75.8
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1304.3 832 75.8
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1303.9 840 76.3
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1300.8 832 75.6
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1300.4 821 76.5
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1296.6 825 76.1
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1295.8 858 74.1
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1293.5 822 76.9
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1289.2 832 75.0
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1289.2 830 75.4
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1283.5 829 74.2
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1282.7 836 73.9
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1281.9 834 75.2
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1279.6 834 74.0
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1276.5 860 72.9
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1276.2 838 74.1
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1275.0 832 73.9
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1274.2 836 73.7
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1269.6 832 73.4
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1268.8 839 73.7
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1268.1 830 73.7
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1268.1 826 74.8
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1267.7 836 73.7
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1267.3 839 72.9
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1267.3 839 72.8
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1266.9 836 73.1
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1265.0 839 73.1
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1265.0 839 73.1
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1263.4 845 73.8
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1263.4 835 73.1
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1261.9 832 73.0
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1261.9 838 72.8
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1261.5 835 74.3
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1261.1 833 73.2
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1258.0 838 72.7
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1257.7 837 72.6
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1257.3 837 72.5
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1256.9 837 72.6
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1255.7 833 73.0
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1253.4 832 72.8
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1253.4 793 76.9
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1251.9 838 72.3
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1251.1 830 72.8
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1250.3 832 72.6
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1250.0 839 74.6
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1249.6 830 72.9
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1248.8 829 73.0
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1247.3 833 73.2
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1245.7 829 72.7
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1243.4 829 72.4
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1242.6 833 72.6
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1242.3 833 72.9
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1241.1 833 72.9
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1239.6 824 72.5
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1239.6 838 71.7
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1238.0 829 72.1
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1238.0 834 72.5
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1237.2 832 72.8
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1236.5 833 72.1
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1229.9 815 73.1
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1228.4 838 71.1
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1228.0 835 72.7
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1225.3 869 70.1
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1223.8 831 72.7
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1223.4 836 70.9
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1217.2 819 72.8
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1217.2 824 71.1
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1216.4 834 71.3
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1211.4 780 75.6
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1204.5 833 70.7
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1195.6 836 69.3
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1187.2 831 69.3
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1154.4 841 69.0
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1149.8 841 68.6
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1145.2 851 67.2
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1134.4 837 67.6
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 0.0e+00 1129.8 840 68.8
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 0.0e+00 1112.8 725 72.6
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1110.1 802 68.8
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1078.5 851 65.1
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 2.9e-306 1055.0 842 62.8
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 4.6e-304 1047.7 835 62.0
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 8.1e-301 1036.9 848 64.4
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 5.8e-299 1030.8 833 60.1
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 3.5e-288 995.0 825 62.7
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 7.4e-286 987.3 828 57.9
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 4.8e-261 904.8 841 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 8.8e-255 884.0 717 60.5
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.1e-249 867.1 933 50.5
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 2.5e-249 865.9 619 68.5
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 7.2e-249 864.4 591 68.2
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 6.6e-226 788.1 578 65.1
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 7.8e-219 764.6 574 63.4
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 2.8e-216 756.1 956 45.3
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 8.0e-216 754.6 493 73.8
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 4.0e-215 752.3 511 72.8
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 4.1e-212 742.3 467 77.3
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 2.1e-211 740.0 493 73.6
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.2e-182 644.4 804 44.2
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 7.2e-156 555.4 381 69.0
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 1.9e-148 530.8 627 49.6
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 6.5e-141 505.8 431 59.6
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.1e-131 474.2 425 62.8
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 2.3e-130 470.7 429 57.8
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 5.0e-117 426.4 291 71.5
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 5.2e-106 389.8 423 48.7
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 1.1e-103 382.1 230 84.8
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 3.6e-99 367.1 426 45.5
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 4.7e-99 366.7 233 79.8
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 1.1e-87 328.9 190 83.7
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 7.8e-78 296.2 322 53.1
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 2.1e-75 288.1 170 87.1
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 3.1e-66 257.7 177 67.8
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 1.8e-58 231.9 157 77.7
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 3.8e-56 224.2 251 47.8
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 1.6e-51 208.8 358 36.3
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 9.3e-47 193.0 133 77.4
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 1.4e-42 179.1 124 69.4
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 1.5e-41 175.6 138 70.3
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.0e-40 170.6 150 64.7
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 6.1e-30 137.1 115 61.7
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 7.9e-30 136.7 89 76.4
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 1.8e-26 125.6 246 36.6
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 7.0e-26 123.6 69 88.4
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.7e-24 119.0 96 54.2
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.2e-24 118.6 94 68.1
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.8e-24 117.9 94 68.1
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 6.5e-24 117.1 73 68.5
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 7.2e-23 113.6 174 36.2
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 9.4e-23 113.2 73 82.2
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 1.2e-22 112.8 287 31.4
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 4.0e-21 107.8 65 87.7
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 8.8e-21 106.7 59 88.1
Zm00001eb265270 Zea mays HOM05D001528 ORTHO05D006464 2.0e-20 105.5 323 27.2
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 2.6e-20 105.1 269 32.0
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 2.6e-20 105.1 352 27.3
PGSC0003DMG400026901 Solanum tuberosum HOM05D001528 ORTHO05D006464 5.7e-20 104.0 317 28.7
Prupe.6G097600 Prunus persica HOM05D001528 ORTHO05D006464 1.3e-19 102.8 323 26.6
Solyc06g073560.4 Solanum lycopersicum HOM05D001528 ORTHO05D006464 1.3e-19 102.8 317 29.0
Sopen06g029920 Solanum pennellii HOM05D001528 ORTHO05D006464 1.3e-19 102.8 317 29.0
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 2.2e-19 102.1 317 28.4
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 2.2e-19 102.1 80 62.5
Atru.chr3.3676 Acer truncatum HOM05D001528 ORTHO05D006464 3.7e-19 101.3 323 26.6
MD03G1116100 Malus domestica HOM05D001528 ORTHO05D006464 6.3e-19 100.5 323 26.6
Lsat_1_v5_gn_2_97920 Lactuca sativa HOM05D001528 ORTHO05D006464 1.4e-18 99.4 322 28.0
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.4e-18 99.4 279 28.7
Aqoxy4G03235 Aquilegia oxysepala HOM05D001528 ORTHO05D006464 3.1e-18 98.2 323 26.9
ATR0314G031 Amborella trichopoda HOM05D001528 ORTHO05D006464 1.2e-17 96.3 330 26.1
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 1.2e-17 96.3 324 26.5
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 5.9e-17 94.0 282 29.1
Zm00001eb355050 Zea mays HOM05D001528 ORTHO05D006464 5.9e-17 94.0 258 27.1
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 7.7e-17 93.6 57 86.0
Haze_27126 Corylus avellana HOM05D001528 ORTHO05D006464 1.1e-15 89.7 409 23.2
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.5e-15 89.4 285 27.7
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 2.5e-15 88.6 265 28.7
MCO09G491 Micromonas commoda HOM05D001528 ORTHO05D022264 5.5e-15 87.4 316 25.3
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 4.0e-13 81.3 197 31.5
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 8.8e-13 80.1 287 26.1
PRCOL_00002017 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 4.4e-12 77.8 285 26.7
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 1.7e-11 75.9 291 25.1
SEGI_08896 Sequoiadendron giganteum HOM05D001528 ORTHO05D006464 2.8e-11 75.1 254 26.4
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 2.7e-09 68.6 291 23.4
PRCOL_00005382 Prasinoderma coloniale HOM05D001528 ORTHO05D022264 1.7e-08 65.9 272 26.5
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 8.0e-06 57.0 53 56.6


User provided reference genes

Program Settings