Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 9.3e-242 840.1 529 100.0
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.0e-111 407.1 416 72.8
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 5.5e-109 399.1 413 72.4
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.4e-101 374.4 327 80.1
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.5e-95 354.4 330 67.0
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.9e-86 323.6 334 71.6
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 5.0e-86 322.8 345 65.5
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 6.5e-86 322.4 369 65.6
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.7e-82 309.3 327 60.6
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.1e-80 305.1 335 64.8
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 2.4e-80 303.9 322 70.2
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 5.3e-80 302.8 342 63.5
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 9.1e-80 302.0 321 61.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.6e-79 301.2 322 71.4
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.2e-78 297.4 322 64.3
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.2e-78 297.4 323 64.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.9e-78 297.0 350 63.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 6.5e-78 295.8 325 58.8
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.1e-77 295.0 314 57.6
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.5e-77 294.7 328 68.3
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.2e-77 293.1 327 51.7
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.5e-77 292.7 330 63.3
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 7.2e-77 292.4 371 63.9
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 9.4e-77 292.0 332 71.7
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.1e-76 290.8 318 67.3
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.7e-76 289.7 319 61.8
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 6.1e-76 289.3 337 69.4
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.4e-75 288.1 237 74.3
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.8e-75 287.7 324 54.0
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.3e-75 287.3 344 65.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 6.7e-75 285.8 352 62.2
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.2e-74 285.0 329 60.5
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 2.6e-74 283.9 343 61.5
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 3.3e-74 283.5 331 58.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 5.7e-74 282.7 323 53.9
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 9.7e-74 282.0 321 61.4
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 9.7e-74 282.0 319 66.5
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.7e-73 281.2 363 65.3
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.7e-73 281.2 340 56.2
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.7e-73 280.0 321 57.9
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 4.8e-73 279.6 328 71.0
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.3e-73 279.3 327 60.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 8.2e-73 278.9 321 59.8
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.4e-72 277.3 347 59.9
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 5.3e-72 276.2 330 48.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 7.0e-72 275.8 317 71.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.2e-71 275.0 355 54.6
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 1.2e-71 275.0 333 70.3
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.6e-71 274.6 313 65.2
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.6e-71 274.6 332 58.7
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 2.0e-71 274.2 336 67.0
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 3.5e-71 273.5 326 51.2
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 7.7e-71 272.3 338 55.3
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.3e-70 271.6 352 58.5
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.3e-70 271.6 320 62.5
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.7e-70 271.2 329 54.4
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 2.2e-70 270.8 322 58.7
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.2e-70 270.8 322 59.0
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.2e-70 270.8 320 59.1
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 3.8e-70 270.0 322 58.7
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.8e-70 270.0 325 56.3
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 6.5e-70 269.2 323 55.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 6.5e-70 269.2 317 63.4
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 8.5e-70 268.9 326 62.3
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.5e-69 268.1 334 57.5
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.9e-69 267.7 318 54.7
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.2e-69 266.9 331 65.0
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.2e-69 266.9 331 65.0
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.2e-69 266.5 317 62.8
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 7.2e-69 265.8 333 57.4
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 9.4e-69 265.4 322 50.0
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 2.1e-68 264.2 325 63.4
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 8.0e-68 262.3 319 61.4
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 8.0e-68 262.3 331 64.0
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.0e-68 262.3 348 61.2
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.0e-67 261.9 329 66.6
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.8e-67 261.2 326 58.3
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.8e-67 261.2 370 53.8
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.3e-67 260.8 336 62.5
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-67 260.8 325 59.1
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.0e-67 260.4 328 63.4
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 4.0e-67 260.0 326 63.2
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 5.2e-67 259.6 342 63.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.5e-66 258.1 333 51.1
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.4e-66 256.9 325 60.6
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 3.4e-66 256.9 316 61.4
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 4.4e-66 256.5 336 63.1
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 7.5e-66 255.8 333 65.2
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.3e-65 255.0 335 60.9
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.7e-65 254.6 324 62.3
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 2.2e-65 254.2 336 64.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-64 251.9 324 54.3
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 3.1e-64 250.4 320 53.1
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.0e-63 247.7 231 61.0
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-63 247.7 330 53.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 2.0e-63 247.7 362 60.2
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.9e-63 246.1 328 46.3
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.0e-62 245.4 327 62.4
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.5e-61 240.7 321 62.0
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.5e-61 240.7 321 62.0
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 4.2e-61 240.0 177 72.9
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.2e-61 240.0 327 58.7
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 5.5e-61 239.6 322 60.2
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-61 239.6 314 57.6
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 5.5e-61 239.6 334 67.1
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.5e-61 239.6 331 67.1
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 7.2e-61 239.2 335 62.1
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.8e-60 237.3 337 54.3
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.7e-60 236.5 335 65.7
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.1e-60 236.1 328 58.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 6.1e-60 236.1 363 60.1
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.4e-59 235.0 382 56.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.4e-59 235.0 255 62.0
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.3e-59 234.2 370 52.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 8.9e-59 232.3 392 49.7
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 3.4e-58 230.3 317 56.8
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 4.4e-58 229.9 333 50.5
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.7e-58 229.6 394 53.8
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 9.8e-58 228.8 218 59.6
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.7e-57 228.0 217 63.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 4.9e-57 226.5 426 49.1
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.9e-57 226.5 212 60.4
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 2.0e-55 221.1 327 65.4
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.0e-54 218.8 343 56.0
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.3e-54 218.4 128 78.9
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.9e-53 214.5 353 56.7
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 3.6e-52 210.3 334 50.0
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.8e-51 208.0 332 62.7
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.2e-51 206.5 394 51.3
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.9e-49 199.9 346 46.8
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 2.7e-47 194.1 219 63.5
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.6e-47 193.4 331 53.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 8.0e-44 182.6 115 73.0
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 4.0e-43 180.3 280 55.4
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.2e-42 178.7 111 73.9
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 2.6e-42 177.6 124 66.9
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 4.4e-42 176.8 256 53.5
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.4e-40 171.8 129 64.3
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 2.1e-39 167.9 310 41.0
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.5e-37 161.8 318 49.1
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 5.6e-37 159.8 260 55.8
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 9.5e-37 159.1 313 38.0
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.5e-29 135.2 168 59.5
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 5.2e-27 126.7 284 38.7
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.2e-26 125.6 81 70.4
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 8.4e-25 119.4 158 58.2
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-24 119.0 278 36.7
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 2.1e-23 114.8 233 51.1
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 4.0e-19 100.5 281 36.7
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-17 95.1 135 47.4
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 3.8e-17 94.0 92 42.4
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 7.8e-15 86.3 143 59.4
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 1.9e-08 65.1 95 41.1
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.2e-07 62.4 104 38.5
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.5e-07 60.8 120 36.7
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 7.9e-07 59.7 38 63.2
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.9e-07 59.7 40 57.5
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 7.9e-07 59.7 93 39.8
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 7.9e-07 59.7 121 36.4
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.0e-06 59.3 93 38.7
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 1.3e-06 58.9 34 61.8
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.8e-06 58.5 38 63.2
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 1.8e-06 58.5 36 61.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 3.0e-06 57.8 43 58.1
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.0e-06 57.8 67 47.8
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 3.9e-06 57.4 38 60.5
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 3.9e-06 57.4 38 60.5
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 3.9e-06 57.4 40 60.0
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 5.1e-06 57.0 93 38.7
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 5.1e-06 57.0 96 39.6
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 8.7e-06 56.2 67 46.3


User provided reference genes

Program Settings