Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 4.0e-241 837.8 457 100.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 3.9e-204 714.9 456 87.5
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.5e-182 642.5 451 80.9
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 4.0e-124 449.1 463 60.0
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 8.6e-119 431.4 462 58.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.7e-112 409.8 469 56.7
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.8e-112 408.3 492 56.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.6e-111 405.2 473 58.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 5.6e-110 402.1 478 56.1
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.6e-109 399.4 520 51.0
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 4.4e-107 392.5 468 54.1
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.9e-105 387.1 469 55.7
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 3.2e-105 386.3 472 54.2
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 4.1e-105 386.0 472 55.1
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.6e-104 384.0 483 53.8
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 2.7e-104 383.3 471 54.6
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.5e-104 382.9 468 53.8
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 3.0e-103 379.8 469 56.5
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.5e-102 377.5 492 53.0
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 7.8e-96 355.1 472 51.1
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.0e-95 353.2 461 51.2
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 3.9e-95 352.8 464 51.5
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.9e-94 350.5 469 50.3
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 1.9e-94 350.5 243 82.3
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 4.3e-94 349.4 471 52.7
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 4.7e-93 345.9 476 52.3
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 6.9e-92 342.0 467 51.6
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 9.0e-92 341.7 465 51.8
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 1.5e-91 340.9 465 49.9
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 5.8e-91 339.0 464 51.1
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 7.6e-91 338.6 475 50.5
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 8.4e-90 335.1 464 48.1
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 9.3e-89 331.6 473 50.5
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-88 331.3 464 48.9
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 3.5e-88 329.7 461 49.5
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.7e-87 327.4 472 48.3
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 5.1e-87 325.9 463 51.4
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.6e-85 320.9 482 46.3
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.8e-85 320.1 377 56.0
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 4.8e-85 319.3 461 49.5
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.1e-84 316.6 470 48.7
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.3e-82 311.2 470 47.0
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.7e-82 310.8 460 45.2
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 3.8e-82 309.7 462 48.9
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 4.9e-82 309.3 467 49.0
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 9.3e-81 305.1 457 45.3
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 3.9e-79 299.7 488 44.3
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.1e-78 298.1 311 57.6
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 7.4e-78 295.4 478 46.9
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.6e-77 294.3 469 46.3
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 4.8e-77 292.7 430 48.1
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 5.3e-76 289.3 483 44.3
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.2e-75 288.1 460 48.3
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 9.9e-75 285.0 463 46.0
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.9e-73 280.8 462 46.5
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 9.3e-73 278.5 474 45.6
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.7e-72 276.9 458 44.3
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 2.7e-72 276.9 442 46.6
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 6.0e-72 275.8 466 44.0
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 1.8e-71 274.2 463 47.3
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 5.1e-71 272.7 486 42.6
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 6.7e-71 272.3 479 44.3
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-70 271.6 416 49.3
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.9e-70 270.8 471 42.0
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 4.3e-70 269.6 504 44.6
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.4e-68 264.6 490 44.3
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 5.3e-68 262.7 483 44.3
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.2e-67 261.5 462 44.6
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 2.6e-67 260.4 462 44.4
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.4e-67 260.0 277 57.0
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 7.6e-67 258.8 479 44.1
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 1.7e-66 257.7 468 44.4
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 3.8e-66 256.5 479 42.4
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.5e-65 252.7 464 44.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.2e-64 251.5 460 42.8
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.7e-64 250.4 463 42.8
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 4.6e-64 249.6 465 42.6
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 4.6e-64 249.6 474 42.2
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 2.3e-63 247.3 470 43.2
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 6.7e-63 245.7 461 43.4
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 8.7e-63 245.4 476 40.8
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-62 244.2 464 43.1
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.5e-62 243.8 476 42.0
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 5.7e-62 242.7 462 41.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 7.4e-62 242.3 521 40.9
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 9.7e-62 241.9 441 40.6
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.7e-62 241.9 461 43.2
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 1.3e-61 241.5 464 41.6
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.3e-61 241.5 460 40.4
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.6e-61 241.1 399 46.1
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 2.8e-61 240.4 457 41.1
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 6.3e-61 239.2 474 42.0
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 5.3e-60 236.1 438 44.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.5e-59 234.6 498 40.6
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 4.5e-59 233.0 470 39.6
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 1.7e-58 231.1 458 43.4
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.1e-57 228.4 468 39.3
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 4.2e-57 226.5 486 39.9
Hma1.2p1_2160F.1_g315590 Hydrangea macrophylla HOM05D002263 ORTHO05D012916 4.2e-57 226.5 309 53.7
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 4.6e-56 223.0 462 39.8
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 7.9e-56 222.2 488 39.3
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.3e-55 220.7 466 38.8
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 8.8e-55 218.8 468 39.1
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 8.8e-55 218.8 468 39.1
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.5e-54 218.0 464 38.4
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.9e-54 217.6 488 38.5
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.7e-54 216.1 452 39.4
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 5.7e-54 216.1 458 41.0
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.8e-52 211.1 454 40.3
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 4.1e-52 209.9 462 38.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 5.3e-52 209.5 499 37.7
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 3.4e-51 206.8 376 44.1
QL04p008050 Quercus lobata HOM05D002263 ORTHO05D012916 2.9e-50 203.8 308 48.4
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.1e-49 201.8 270 49.6
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 2.5e-49 200.7 241 54.8
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 2.5e-49 200.7 284 47.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 8.8e-47 192.2 319 41.7
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.6e-46 190.7 472 36.2
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 5.7e-46 189.5 502 37.6
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 6.3e-45 186.0 484 36.4
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.3e-45 186.0 422 38.4
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 3.1e-44 183.7 145 67.6
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 4.1e-44 183.3 369 42.0
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.7e-42 177.9 466 35.0
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 2.9e-42 177.2 230 51.7
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 2.9e-42 177.2 440 35.5
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.1e-41 175.3 459 34.0
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.1e-41 175.3 459 34.0
QL08p003465 Quercus lobata HOM05D002263 ORTHO05D012916 1.1e-41 175.3 150 66.0
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.7e-40 170.6 159 59.1
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 4.7e-40 169.9 442 38.9
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.4e-39 168.3 498 33.7
QL02p053676 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-39 167.2 141 66.0
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.7e-38 162.9 141 61.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.7e-38 162.9 141 61.0
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 9.7e-38 162.2 260 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 8.2e-37 159.1 504 35.5
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.1e-36 158.7 508 35.0
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.3e-36 156.4 433 33.7
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.0e-35 154.5 220 46.4
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 3.8e-34 150.2 148 56.1
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-32 145.2 135 61.5
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 6.1e-32 142.9 470 31.9
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 7.5e-30 136.0 257 39.7
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.8e-29 134.0 152 52.0
QL05p088556 Quercus lobata HOM05D002263 ORTHO05D012916 2.8e-29 134.0 282 42.2
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.1e-28 132.1 111 65.8
MBI05_g27107_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.7e-24 117.5 110 60.0
QL08p003462 Quercus lobata HOM05D002263 ORTHO05D012916 5.2e-23 113.2 200 45.5
QL08p031651 Quercus lobata HOM05D002263 ORTHO05D012916 5.7e-22 109.8 193 47.2
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 5.7e-22 109.8 422 29.6
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 9.1e-20 102.4 224 32.6
MBI02_g23142_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D012916 2.7e-19 100.9 196 41.3
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.9e-19 99.8 119 44.5
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.7e-18 98.2 309 30.1
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 2.3e-18 97.8 128 44.5
QL09p040356 Quercus lobata HOM05D002263 ORTHO05D012916 3.8e-18 97.1 94 63.8
QL04p008686 Quercus lobata HOM05D002263 ORTHO05D012916 2.1e-16 91.3 76 75.0
Zm00001eb190460 Zea mays HOM05D002263 ORTHO05D003537 5.2e-15 86.7 170 41.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 6.8e-15 86.3 431 26.7
AL3G19410 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.6e-14 84.3 147 40.1
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 3.1e-12 77.4 173 36.4
Sed0015505 Sechium edule HOM05D002263 ORTHO05D012916 4.1e-12 77.0 161 43.5
EL10As2g23258 Beta vulgaris HOM05D002263 ORTHO05D012916 3.5e-11 73.9 102 44.1
EL10As2g23282 Beta vulgaris HOM05D002263 ORTHO05D012916 3.8e-10 70.5 120 38.3
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 9.5e-09 65.9 144 29.9
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 1.8e-07 61.6 90 50.0
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 1.8e-07 61.6 90 50.0
CARHR061110 Cardamine hirsuta HOM05D002263 ORTHO05D012916 8.9e-07 59.3 297 29.3
AL8G27570 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.0e-06 58.2 202 29.7
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 2.0e-06 58.2 92 50.0
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 2.0e-06 58.2 92 50.0


User provided reference genes

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