Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 7.0e-150 533.9 260 100.0
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 6.4e-95 351.3 260 70.4
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.6e-43 179.9 182 54.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.0e-40 170.2 279 39.1
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 3.0e-36 156.4 222 41.9
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.1e-33 146.0 237 39.2
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 7.0e-33 145.2 204 38.7
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.2e-32 144.4 299 35.1
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-32 143.7 242 39.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.7e-32 143.3 248 39.1
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.5e-32 142.9 248 39.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.0e-31 141.4 238 36.1
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-31 141.0 248 38.7
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.3e-31 141.0 241 39.0
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.7e-31 140.6 207 36.2
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 3.8e-31 139.4 228 39.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-30 137.9 241 38.6
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.9e-30 137.1 250 37.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.5e-30 135.6 228 38.6
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 9.5e-30 134.8 281 33.8
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.6e-29 134.0 264 36.7
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 2.1e-29 133.7 246 36.2
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 2.8e-29 133.3 228 37.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.4e-28 131.0 252 36.9
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.4e-28 131.0 198 40.4
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.3e-28 130.2 187 43.3
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 3.4e-27 126.3 234 36.8
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 3.4e-27 126.3 192 40.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.4e-27 126.3 254 35.8
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.7e-27 125.6 235 36.6
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 7.5e-27 125.2 258 34.9
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.8e-27 124.8 239 36.8
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-26 124.4 272 32.4
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.3e-26 124.4 272 32.4
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.3e-26 124.4 298 33.9
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-26 124.4 234 35.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.7e-26 124.0 245 35.9
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.7e-26 124.0 193 38.3
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.2e-26 123.6 239 36.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.2e-26 123.6 181 39.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-25 121.3 252 34.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.4e-25 120.9 265 33.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.1e-25 119.8 252 32.9
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 4.1e-25 119.4 249 33.3
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 9.2e-25 118.2 275 33.8
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 9.2e-25 118.2 252 33.3
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.8e-23 112.8 200 34.5
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 8.6e-23 111.7 260 31.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.1e-22 111.3 259 30.1
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.3e-22 109.8 210 32.9
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.3e-22 109.4 207 33.8
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.2e-21 107.8 251 33.9
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.2e-21 107.8 246 32.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-21 107.1 193 34.7
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 2.1e-21 107.1 193 34.7
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 2.1e-21 107.1 193 34.7
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.6e-21 106.3 245 31.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.6e-21 106.3 192 34.4
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 3.6e-21 106.3 263 31.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.6e-21 106.3 222 32.9
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 3.6e-21 106.3 182 36.8
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 8.0e-21 105.1 105 49.5
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 1.4e-20 104.4 298 30.2
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.4e-20 104.4 199 34.2
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.8e-20 104.0 259 30.1
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.8e-20 104.0 250 31.2
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.8e-20 104.0 279 31.2
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 4.0e-20 102.8 282 31.2
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 5.2e-20 102.4 243 33.3
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 6.8e-20 102.1 282 31.2
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 8.9e-20 101.7 245 31.4
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.2e-19 101.3 194 31.4
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.2e-19 101.3 179 35.2
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.2e-19 101.3 280 28.9
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.5e-19 100.9 255 29.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-19 100.9 194 30.4
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.5e-19 100.9 252 31.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.5e-19 100.9 253 30.4
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.5e-19 100.9 185 31.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.5e-19 100.9 250 30.8
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.0e-19 100.5 195 34.4
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.8e-19 99.0 203 32.5
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 9.8e-19 98.2 238 31.5
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 9.8e-19 98.2 194 29.9
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.7e-18 97.4 195 32.8
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.2e-18 97.1 266 30.5
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 6.4e-18 95.5 189 34.4
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 6.4e-18 95.5 200 29.5
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.1e-17 94.7 254 29.1
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.8e-17 94.0 212 29.2
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 2.4e-17 93.6 197 33.0
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.2e-17 93.2 180 33.9
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 4.1e-17 92.8 118 44.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 4.1e-17 92.8 214 29.9
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 5.4e-17 92.4 185 33.0
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.2e-16 91.3 220 29.5
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.2e-16 91.3 220 29.5
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.2e-16 91.3 199 32.2
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.0e-16 90.5 210 29.5
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.0e-16 90.5 108 41.7
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.0e-16 90.5 108 41.7
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.7e-16 90.1 220 29.5
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.5e-16 89.7 110 43.6
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 6.0e-16 89.0 255 28.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.0e-16 89.0 196 32.1
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 5.0e-15 85.9 181 33.7
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 6.6e-15 85.5 237 28.7
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 6.6e-15 85.5 246 27.6
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 1.1e-14 84.7 261 27.6
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-14 84.3 208 29.3
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-14 84.0 236 26.7
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 3.3e-14 83.2 203 30.0
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 3.3e-14 83.2 252 27.0
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 4.3e-14 82.8 125 37.6
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 8.0e-13 78.6 201 30.8
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 8.0e-13 78.6 199 27.6
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 8.0e-13 78.6 118 34.7
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 8.0e-13 78.6 227 28.6
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 1.8e-12 77.4 261 25.7
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 2.3e-12 77.0 197 29.9
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 2.3e-12 77.0 236 28.8
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 3.1e-12 76.6 244 26.6
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.4e-11 72.8 152 35.5
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 4.4e-11 72.8 108 40.7
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 5.8e-11 72.4 115 36.5
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 9.8e-11 71.6 206 29.6
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.9e-10 70.1 150 35.3
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 4.1e-09 66.2 207 29.5
A02p07130 Brassica napus HOM05D004190 ORTHO05D004692 1.6e-08 64.3 111 40.5
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-08 63.9 101 36.6
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.7e-08 63.5 152 33.6
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.3e-07 60.5 62 41.9
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 5.0e-07 59.3 190 27.9
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 6.6e-07 58.9 152 28.9
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.6e-07 58.9 179 28.5
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.6e-07 58.9 71 36.6
CAN.G1733.3 Capsicum annuum HOM05D004190 ORTHO05D004692 8.6e-07 58.5 94 30.9
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.1e-06 58.2 153 30.7
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 1.1e-06 58.2 155 28.4
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-06 57.4 184 24.5
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.9e-06 57.4 198 28.8
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.9e-06 57.4 223 26.9
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.9e-06 57.4 127 29.1
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.9e-06 57.4 161 28.6
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.5e-06 57.0 185 30.3
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.5e-06 57.0 161 27.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.3e-06 56.6 106 33.0
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 4.3e-06 56.2 131 32.8
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 7.3e-06 55.5 159 30.8
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 9.5e-06 55.1 117 32.5


User provided reference genes

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