Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 0.0e+00 2343.2 1155 100.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1829.7 1072 86.9
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1354.0 1093 66.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 0.0e+00 1262.3 873 76.1
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 0.0e+00 1134.8 1065 58.9
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 4.8e-283 978.4 1084 52.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 8.2e-251 871.3 1094 46.5
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 6.7e-245 851.7 1107 46.3
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.7e-245 851.7 1042 47.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 5.3e-242 842.0 1106 46.8
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.6e-233 813.9 1089 46.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-228 797.3 1097 45.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 5.7e-228 795.4 1096 44.3
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.8e-226 790.4 1088 45.1
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 4.7e-222 775.8 1105 44.4
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.7e-220 768.8 1153 42.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-215 754.2 1105 43.3
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.6e-214 749.6 1159 41.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.3e-211 741.1 1106 43.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 3.7e-211 739.6 1084 42.1
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.1e-210 738.0 1084 43.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.9e-207 727.2 1094 42.6
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.3e-207 726.5 1129 40.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-204 717.6 1098 41.3
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 4.4e-204 716.1 1091 41.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.2e-182 644.8 1106 40.1
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.2e-179 634.0 1109 38.9
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 7.8e-177 625.5 1112 38.6
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.3e-176 624.8 1103 39.6
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.8e-174 617.1 1111 38.1
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.3e-173 612.8 1105 37.1
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 4.5e-172 609.8 1101 37.6
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.0e-169 599.4 1112 37.5
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.9e-168 596.7 1103 37.4
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 7.1e-162 575.9 1099 35.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.0e-160 572.0 1099 35.2
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.6e-156 557.4 1115 34.8
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 5.8e-156 556.2 1125 34.5
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.9e-155 553.1 1097 34.8
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 3.9e-152 543.5 1069 34.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 6.9e-149 532.7 1115 35.2
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.5e-148 530.0 1080 35.2
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.0e-147 526.6 1076 35.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.5e-147 526.2 1171 34.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.5e-146 523.1 1186 34.4
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.6e-145 520.0 1104 35.2
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.0e-144 518.8 1070 35.4
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.8e-144 518.1 1082 33.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.3e-143 513.8 1071 34.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.4e-143 512.7 1147 33.7
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.2e-142 511.1 1127 33.3
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 8.2e-142 509.2 1071 35.3
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 5.3e-141 506.5 1070 35.1
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 9.1e-141 505.8 1127 33.5
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.6e-140 504.2 1099 34.0
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 7.7e-140 502.7 814 39.8
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.7e-139 501.5 1089 35.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.5e-138 496.5 1071 33.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 5.5e-138 496.5 1077 32.4
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 7.2e-138 496.1 1082 33.7
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.8e-134 484.2 1090 35.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.4e-133 481.9 1049 33.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.1e-133 480.3 1093 31.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 5.9e-132 476.5 570 46.8
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 2.5e-130 471.1 1098 33.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.2e-130 469.5 1101 33.5
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.7e-129 467.6 1093 31.7
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-128 465.3 1084 33.9
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.8e-126 457.6 1166 32.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 4.7e-121 440.3 1071 31.8
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.0e-120 439.1 1077 31.8
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.3e-120 438.0 1110 33.3
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.3e-120 438.0 1099 33.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 7.7e-116 422.9 1088 30.1
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 5.0e-115 420.2 1091 31.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.6e-113 415.2 833 34.8
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 9.8e-111 406.0 1084 31.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.9e-99 367.9 1049 30.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.9e-98 365.2 781 34.3
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 7.3e-98 363.2 697 37.6
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.0e-96 359.4 1108 28.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.9e-94 351.3 1047 30.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.4e-93 347.1 740 34.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.5e-90 338.2 833 33.0
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 6.4e-86 323.6 411 47.7
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 7.1e-85 320.1 829 32.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 7.1e-85 320.1 786 33.3
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.2e-84 319.3 786 33.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.2e-81 309.3 1157 26.1
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 6.2e-81 307.0 1053 27.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 8.1e-81 306.6 773 32.3
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.2e-80 303.9 856 30.6
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-68 265.8 702 31.1
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.3e-65 256.1 805 31.1
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.3e-65 256.1 984 27.7
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 4.9e-62 244.2 579 33.0
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.9e-61 242.3 669 29.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.7e-59 235.7 813 29.9
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.3e-59 235.3 242 52.9
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-58 231.9 509 34.0
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.6e-57 229.2 322 41.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 3.1e-56 224.9 334 40.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 4.5e-55 221.1 800 28.2
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.4e-53 214.2 354 38.7
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 7.1e-53 213.8 789 27.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.3e-51 209.5 787 29.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.3e-50 204.5 485 33.2
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-48 199.9 542 32.5
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.1e-48 199.9 1058 25.2
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.3e-48 197.6 578 29.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.0e-47 195.7 292 38.4
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.0e-43 183.3 725 26.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.6e-39 168.7 790 26.5
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-37 162.2 171 52.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 4.6e-36 157.9 340 33.5
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.0e-35 156.8 1078 22.7
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.3e-35 155.6 152 51.3
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 8.7e-35 153.7 224 40.2
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.7e-34 151.0 156 48.7
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 5.7e-34 151.0 155 48.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.7e-34 151.0 161 47.8
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.2e-33 149.1 144 51.4
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.2e-33 149.1 395 29.1
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.1e-32 145.2 770 25.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.0e-31 142.5 149 49.7
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 7.2e-29 134.0 141 49.6
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.1e-28 132.5 111 56.8
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 6.7e-27 127.5 141 47.5
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.3e-26 125.2 316 30.1
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 8.2e-25 120.6 509 27.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.1e-24 118.2 315 28.3
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.3e-24 117.9 407 25.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.0e-23 115.9 119 48.7
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 7.9e-20 104.0 1034 22.5
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.4e-19 103.2 491 26.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.8e-19 100.5 433 27.5
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.4e-18 97.4 95 50.5
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.2e-17 95.9 59 72.9
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.1e-12 79.3 212 31.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 3.6e-12 78.6 70 52.9
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 4.0e-11 75.1 92 42.4
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 8.8e-11 73.9 245 31.0
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 4.4e-10 71.6 794 22.2
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.1e-08 67.0 122 34.4
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.7e-06 59.7 51 47.1


User provided reference genes

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