Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 2159.4 1118 100.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 2043.5 1135 93.5
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1703.3 1126 79.3
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1627.1 1146 75.5
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1612.0 1147 75.4
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1606.7 1144 74.6
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1601.6 1129 75.2
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1599.7 1137 75.1
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1597.8 1161 73.9
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1593.2 1138 75.7
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1592.4 1144 74.5
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1591.2 1162 74.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1585.1 1138 74.8
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1575.5 1126 74.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1572.8 1179 72.0
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1564.3 1139 73.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1561.2 1179 72.0
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1560.4 1162 72.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1558.9 1122 73.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1553.9 1164 72.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1553.5 1131 73.7
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1553.1 1153 72.8
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1551.2 1129 73.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1550.8 1128 73.1
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1550.0 1131 73.4
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1549.6 1150 71.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1544.6 1151 71.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1542.3 1134 72.1
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1538.5 1147 71.9
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1538.1 1148 72.0
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1531.5 1131 72.9
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1528.5 1144 71.1
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1526.5 1148 70.5
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1522.3 1152 70.5
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1519.6 1156 70.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1519.6 1147 71.3
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1509.6 1147 71.9
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1500.7 1133 70.4
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1498.4 1155 71.0
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1489.2 1125 69.9
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1148 70.6
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1488.8 1148 70.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1486.5 1151 70.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1484.9 1122 70.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1161 69.9
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1152 69.9
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1479.9 1143 68.9
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1476.5 1163 69.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1469.9 1149 70.1
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1469.1 1118 70.6
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1465.7 1134 69.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1458.0 1134 69.0
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1457.2 1164 67.3
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1134 68.3
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1451.8 1143 68.1
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1451.4 1120 69.3
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1448.7 1129 68.8
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1444.9 1198 66.8
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1431.8 1142 67.8
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1427.5 1124 69.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1421.4 1145 67.4
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1124 68.6
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1124 68.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1143 67.4
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1412.1 1122 67.7
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1410.2 1150 67.0
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1147 66.9
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1147 66.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1407.1 1128 67.7
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1405.2 1151 67.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1404.8 1150 66.9
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1108 67.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1148 66.8
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1397.1 1147 66.8
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1127 66.6
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1122 67.5
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1387.1 1151 65.4
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1385.5 1120 67.1
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1159 65.5
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1372.5 1137 65.5
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1372.1 1148 65.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1367.8 1143 65.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1357.8 1136 66.0
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1142 63.4
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1291.2 1162 62.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1290.4 1203 59.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1273.5 931 73.0
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1266.1 888 76.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1184.1 913 70.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1169.5 1029 62.5
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1111.7 1232 52.8
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 0.0e+00 1092.4 730 75.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1077.8 1204 51.2
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.3e-309 1066.6 1220 50.3
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.1e-291 1006.1 1136 51.5
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-279 966.1 743 68.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 5.9e-254 881.7 1377 41.5
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 9.4e-244 847.8 587 75.6
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.2e-237 826.6 589 74.5
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 3.4e-225 786.2 543 75.7
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.5e-225 785.0 536 76.9
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.3e-224 784.3 624 67.3
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 3.8e-221 772.7 536 75.6
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.0e-205 721.5 618 63.9
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 4.7e-195 686.0 581 63.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.9e-180 637.5 1143 38.2
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.1e-175 619.0 562 60.5
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.3e-172 609.8 535 62.4
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 6.7e-165 585.9 538 61.2
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.3e-147 526.2 461 64.0
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.5e-143 514.2 538 55.0
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.8e-139 500.0 391 67.0
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-135 488.8 351 72.6
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 2.0e-129 468.0 329 74.2
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 2.5e-119 434.5 466 55.4
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-107 395.6 361 63.2
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.8e-106 391.7 542 45.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 4.1e-106 390.6 1167 28.4
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.0e-104 383.6 374 58.8
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-94 351.3 240 77.1
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 7.5e-92 343.2 358 52.5
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 2.9e-91 341.3 1152 28.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.6e-81 308.9 261 57.9
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.0e-80 306.2 413 49.2
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 4.4e-76 290.8 218 70.2
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.4e-74 285.8 249 63.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.3e-67 262.7 237 61.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 5.4e-66 257.3 347 47.6
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 3.9e-64 251.1 347 46.4
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-63 248.8 201 63.7
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.5e-63 248.4 183 70.5
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 7.3e-63 246.9 347 45.5
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-62 245.7 347 45.8
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-62 245.4 144 87.5
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 6.2e-62 243.8 142 84.5
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.3e-48 199.5 101 98.0
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 6.7e-48 197.2 113 88.5
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-46 193.0 111 88.3
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 3.7e-46 191.4 113 86.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 6.9e-45 187.2 113 85.0
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 6.9e-45 187.2 113 85.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-42 179.9 583 29.3
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-42 178.3 109 85.3
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 3.2e-42 178.3 180 58.3
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-39 169.5 101 86.1
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.7e-39 166.8 89 93.3
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.4e-37 162.9 97 81.4
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-37 162.9 94 87.2
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 2.7e-33 148.7 82 89.0
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.9e-29 134.0 120 59.2
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 6.5e-27 127.5 148 45.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 5.1e-24 117.9 71 85.9
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.1e-24 117.9 172 48.3
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 9.1e-21 107.1 75 74.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.6e-20 105.5 75 73.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 3.5e-20 105.1 85 62.4
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.8e-19 101.7 102 52.9
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.5e-18 97.8 86 64.0
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 8.3e-06 57.4 45 66.7


User provided reference genes

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