Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 2.0e-201 705.7 385 100.0
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 2.0e-201 705.7 385 100.0
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 6.4e-184 647.5 385 91.9
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 7.1e-175 617.5 385 86.5
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 1.5e-172 609.8 385 84.2
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 1.9e-172 609.4 385 84.2
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 9.3e-167 590.5 385 80.5
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 6.9e-162 574.3 385 79.5
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 2.5e-159 565.8 385 76.6
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 4.2e-159 565.1 384 78.4
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 3.6e-158 562.0 385 77.4
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.7e-157 557.8 385 78.4
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.7e-157 557.8 385 78.4
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 3.3e-156 555.4 385 78.4
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 2.2e-155 552.7 385 79.2
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 6.3e-155 551.2 385 76.1
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.4e-154 549.3 385 76.6
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 3.1e-154 548.9 385 74.3
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 4.1e-154 548.5 385 74.5
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 1.5e-153 546.6 385 74.8
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 3.4e-153 545.4 385 77.1
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 5.9e-153 544.7 385 73.5
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 7.7e-153 544.3 385 73.8
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.7e-152 543.1 385 75.1
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 2.9e-152 542.3 387 73.6
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.4e-151 540.0 385 75.1
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 4.2e-151 538.5 385 74.8
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 4.6e-150 535.0 391 77.2
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 6.1e-150 534.6 385 77.7
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 1.0e-149 533.9 387 77.0
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.0e-149 532.3 385 77.4
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 3.9e-149 531.9 385 77.1
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.9e-149 531.9 385 77.1
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 6.7e-149 531.2 377 74.5
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 1.5e-148 530.0 385 76.1
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.5e-148 530.0 385 73.8
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.5e-148 530.0 386 74.4
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 2.6e-148 529.3 390 74.9
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 3.3e-148 528.9 386 72.8
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 4.4e-148 528.5 388 75.3
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 5.7e-148 528.1 386 74.4
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 1.7e-147 526.6 391 75.2
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 3.7e-147 525.4 418 71.3
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 3.7e-147 525.4 385 70.4
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.4e-146 523.5 385 72.2
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 5.3e-146 521.5 389 69.7
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 5.3e-146 521.5 389 69.7
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.2e-145 520.4 392 69.1
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 1.2e-145 520.4 386 72.0
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 2.6e-145 519.2 393 68.7
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 3.4e-145 518.8 386 72.5
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 1.0e-144 517.3 387 72.6
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 2.9e-144 515.8 386 69.4
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 6.5e-144 514.6 386 71.2
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 1.1e-143 513.8 384 71.1
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 1.9e-143 513.1 383 71.3
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 2.5e-143 512.7 386 68.9
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 2.5e-143 512.7 361 74.0
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 3.2e-143 512.3 381 70.6
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 3.2e-143 512.3 378 74.3
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 5.5e-143 511.5 381 70.6
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 9.4e-143 510.8 381 70.6
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 1.2e-142 510.4 385 70.1
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 1.6e-142 510.0 386 69.2
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 2.7e-142 509.2 381 70.9
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 2.7e-142 509.2 381 70.9
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 3.6e-142 508.8 389 69.2
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 6.1e-142 508.1 361 73.4
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 7.9e-142 507.7 372 74.5
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 4.4e-140 501.9 391 69.6
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 5.7e-140 501.5 368 73.9
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 9.7e-140 500.7 385 69.1
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 1.7e-139 500.0 369 72.9
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 2.2e-139 499.6 368 73.6
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 2.2e-139 499.6 356 72.8
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 2.2e-139 499.6 385 68.6
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 2.2e-139 499.6 363 76.0
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 4.8e-139 498.4 365 71.8
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 4.8e-139 498.4 385 68.1
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 1.1e-138 497.3 365 71.8
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 2.4e-138 496.1 384 67.4
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 4.1e-138 495.4 323 78.0
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 7.0e-138 494.6 385 67.0
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.6e-137 493.4 382 68.8
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.6e-137 493.4 382 68.8
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 3.5e-137 492.3 401 65.1
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 1.5e-135 486.9 387 69.0
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 1.6e-134 483.4 385 65.5
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 6.1e-134 481.5 388 66.2
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 3.3e-132 475.7 385 66.8
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 3.3e-132 475.7 386 67.1
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 8.2e-131 471.1 429 61.3
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 1.8e-130 469.9 385 69.1
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 7.0e-130 468.0 341 69.8
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 1.0e-128 464.2 355 67.9
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 3.8e-128 462.2 386 64.8
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 6.5e-128 461.5 386 63.5
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 1.1e-127 460.7 385 66.0
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 9.4e-127 457.6 354 71.5
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.2e-126 457.2 495 53.9
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 1.2e-126 457.2 385 64.4
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 6.1e-126 454.9 375 65.6
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 1.0e-125 454.1 387 69.5
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 1.0e-125 454.1 372 69.4
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.8e-125 453.4 324 76.5
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 8.8e-125 451.1 385 68.3
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 7.7e-121 438.0 385 63.4
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 5.0e-120 435.3 341 67.4
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 7.2e-119 431.4 337 70.0
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 8.8e-117 424.5 308 71.8
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.5e-116 423.7 466 54.5
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 9.8e-116 421.0 324 71.9
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.3e-115 420.6 285 76.5
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 7.0e-114 414.8 381 62.2
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 3.4e-108 396.0 271 77.5
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 3.2e-106 389.4 335 58.5
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 7.0e-106 388.3 265 75.5
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 1.2e-105 387.5 255 78.4
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 3.5e-105 386.0 288 70.8
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 2.3e-104 383.3 286 71.0
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 6.6e-104 381.7 290 68.6
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 3.3e-103 379.4 295 70.2
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 5.6e-103 378.6 286 69.9
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 1.2e-102 377.5 387 56.6
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 1.5e-100 370.5 273 71.4
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.3e-99 367.5 309 65.7
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 1.7e-99 367.1 376 53.7
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 1.9e-98 363.6 344 52.9
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 2.4e-98 363.2 277 67.9
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 5.6e-95 352.1 324 63.0
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.2e-91 340.1 337 50.4
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 6.4e-91 338.6 373 53.9
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 8.3e-91 338.2 338 50.6
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 3.5e-89 332.8 306 53.9
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 2.3e-88 330.1 229 69.0
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.5e-87 327.4 237 73.8
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 4.3e-87 325.9 306 54.9
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.1e-85 321.2 309 52.8
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 5.8e-84 315.5 235 69.4
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 5.8e-84 315.5 279 62.7
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 1.3e-75 287.7 213 68.1
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 1.5e-71 274.2 316 46.5
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 1.2e-60 238.0 335 42.7
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 3.2e-58 229.9 302 41.4
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.2e-52 211.5 176 66.5
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 1.1e-45 188.3 127 80.3
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 1.2e-44 184.9 167 61.1
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 5.1e-40 169.5 129 72.1
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 2.3e-32 144.1 87 85.1
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 1.5e-31 141.4 118 66.1
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.6e-31 140.6 115 66.1
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 2.6e-31 140.6 87 82.8
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 4.8e-30 136.3 115 65.2
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 9.1e-29 132.1 108 75.9
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 6.1e-25 119.4 77 77.9
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 1.1e-18 98.6 59 79.7
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 1.1e-18 98.6 61 80.3
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 1.8e-13 81.3 49 81.6
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.4e-13 80.9 69 60.9
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 2.9e-11 73.9 105 39.0


User provided reference genes

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