Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 3.5e-230 801.2 386 100.0
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.8e-218 762.3 389 94.6
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 1.2e-169 600.1 386 75.4
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.0e-168 597.0 386 74.9
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.2e-166 590.1 382 74.1
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 8.7e-165 583.9 384 74.7
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 2.5e-164 582.4 381 75.1
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.6e-163 579.7 384 74.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 3.7e-163 578.6 388 71.6
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 2.4e-162 575.9 385 72.2
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 5.9e-161 571.2 394 72.1
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.7e-160 569.7 393 71.2
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.5e-159 565.8 395 70.9
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 9.4e-159 563.9 387 71.8
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.5e-156 556.6 379 72.6
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 7.4e-156 554.3 381 71.1
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 7.4e-156 554.3 379 72.3
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 9.7e-156 553.9 385 72.7
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 6.9e-154 547.7 381 70.9
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 1.5e-153 546.6 385 69.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.5e-153 546.6 392 68.6
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.6e-153 545.8 392 68.6
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 3.8e-152 542.0 382 70.7
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.5e-151 539.3 390 67.7
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 4.2e-151 538.5 379 70.2
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 7.2e-151 537.7 374 70.9
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.7e-150 535.8 384 69.3
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.8e-149 533.1 376 70.2
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 6.7e-149 531.2 379 69.9
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 8.8e-149 530.8 375 70.1
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 8.8e-149 530.8 387 67.4
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 8.8e-149 530.8 374 69.8
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 1.1e-148 530.4 384 68.8
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.6e-148 529.3 380 69.2
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.3e-147 526.9 378 69.6
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 1.3e-147 526.9 375 69.1
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.7e-147 526.6 375 69.3
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 2.2e-147 526.2 381 68.5
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.1e-146 523.9 381 68.5
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 1.8e-146 523.1 394 66.2
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.8e-146 523.1 389 68.6
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 2.6e-145 519.2 379 65.7
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 3.5e-145 518.8 375 69.1
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 8.5e-144 514.2 380 67.9
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-143 513.5 378 66.7
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.5e-143 513.5 391 65.5
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.5e-143 513.5 368 69.0
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.9e-143 513.1 374 67.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.5e-143 512.7 376 67.8
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 3.2e-143 512.3 377 67.6
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 4.2e-143 511.9 379 66.2
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 2.1e-142 509.6 410 63.4
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.0e-141 507.3 387 67.2
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 1.8e-141 506.5 378 66.1
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 2.3e-141 506.1 378 67.2
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.5e-140 503.4 393 65.4
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 4.8e-139 498.4 369 66.1
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 1.1e-138 497.3 355 69.3
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.4e-138 496.9 380 65.0
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 3.5e-137 492.3 378 65.3
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.3e-136 490.3 378 65.3
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 4.2e-135 485.3 361 65.9
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 3.0e-133 479.2 365 66.6
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.5e-132 476.9 316 74.1
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 2.0e-132 476.5 387 62.3
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 1.7e-131 473.4 379 63.1
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 3.7e-131 472.2 366 64.5
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.8e-131 471.9 384 62.2
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.6e-129 466.8 342 67.8
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 3.5e-129 465.7 380 62.1
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 3.8e-128 462.2 350 65.1
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 8.6e-128 461.1 373 63.0
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 7.2e-127 458.0 368 61.4
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 2.3e-125 453.0 325 71.1
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 6.3e-123 444.9 369 62.9
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 3.5e-121 439.1 372 59.7
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 5.6e-119 431.8 325 63.7
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 4.4e-116 422.2 294 69.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 4.6e-113 412.1 310 66.8
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.0e-108 396.7 390 56.2
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 4.6e-105 385.6 449 48.6
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 5.2e-101 372.1 350 54.3
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.3e-99 367.5 463 46.0
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 1.1e-98 364.4 373 51.5
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 3.2e-98 362.8 282 62.4
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 7.1e-98 361.7 325 58.2
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.0e-96 356.3 373 55.0
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.9e-95 353.6 291 61.9
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.2e-83 313.5 369 49.6
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 6.0e-81 305.4 538 37.2
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 6.2e-78 295.4 281 56.2
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 3.1e-77 293.1 279 55.9
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 2.4e-74 283.5 171 75.4
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 3.2e-74 283.1 167 79.6
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 6.0e-73 278.9 241 58.9
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 7.9e-73 278.5 261 55.2
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.3e-72 276.9 263 55.1
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 5.6e-71 272.3 382 41.1
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.2e-68 264.6 304 50.3
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 2.0e-68 263.8 430 37.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.8e-67 259.6 357 43.4
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 7.1e-66 255.4 253 56.1
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 5.6e-63 245.7 155 74.2
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 7.9e-57 225.3 217 55.8
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 4.8e-54 216.1 403 37.7
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 4.3e-47 193.0 196 51.5
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 2.9e-43 180.3 397 32.2
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.7e-40 169.1 321 37.4
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.7e-40 169.1 111 71.2
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 1.9e-34 151.0 302 33.4
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 2.1e-33 147.5 85 77.6
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 2.3e-32 144.1 175 43.4
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 3.7e-30 136.7 141 49.6
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.6e-28 131.3 80 78.8
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 6.5e-27 125.9 84 71.4
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.1e-26 125.2 96 61.5
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-26 124.8 80 73.8
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 4.8e-22 109.8 65 75.4
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 4.5e-20 103.2 69 73.9
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 7.2e-18 95.9 62 67.7
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-17 95.1 65 69.2
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.0e-16 90.1 63 69.8
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.5e-15 88.2 120 40.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.7e-15 86.3 52 75.0
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.8e-14 83.2 57 64.9
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.0e-11 73.2 46 69.6
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 8.6e-11 72.4 87 42.5
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.8e-09 67.4 40 72.5
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.6e-07 60.8 30 86.7
PRCOL_00004583 Prasinoderma coloniale HOM05D000064 ORTHO05D025009 2.6e-07 60.8 363 24.0
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 4.4e-07 60.1 67 47.8


User provided reference genes

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