Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 3.0e-73 278.5 145 100.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.3e-62 242.3 148 88.5
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.4e-59 233.0 145 84.8
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 8.1e-47 190.7 146 68.5
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.9e-43 179.5 146 65.8
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.1e-30 135.6 90 75.6
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 3.1e-30 135.6 86 73.3
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.3e-30 134.8 81 76.5
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.5e-29 133.3 117 61.5
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.0e-29 132.9 133 55.6
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.0e-29 132.9 128 58.6
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.0e-29 132.9 91 68.1
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.6e-29 132.5 72 87.5
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.6e-29 132.5 75 78.7
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.6e-29 132.5 75 78.7
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 2.6e-29 132.5 75 78.7
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 3.4e-29 132.1 93 71.0
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 5.8e-29 131.3 91 72.5
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 5.8e-29 131.3 96 69.8
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 7.6e-29 131.0 77 76.6
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 9.9e-29 130.6 89 73.0
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.2e-28 129.4 103 63.1
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 2.2e-28 129.4 72 79.2
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-28 129.0 100 64.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-28 129.0 125 56.8
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 2.9e-28 129.0 72 79.2
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 2.9e-28 129.0 69 82.6
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 2.9e-28 129.0 69 82.6
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-28 128.3 72 77.8
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 6.4e-28 127.9 72 76.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 6.4e-28 127.9 143 52.4
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 6.4e-28 127.9 75 76.0
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.4e-27 126.7 72 76.4
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 1.9e-27 126.3 73 76.7
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.9e-27 126.3 75 74.7
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-27 125.9 130 51.5
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.4e-27 125.9 116 55.2
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.2e-27 125.6 75 74.7
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.2e-27 125.6 130 51.5
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 3.2e-27 125.6 69 81.2
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 4.2e-27 125.2 130 52.3
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.2e-26 123.6 116 56.0
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.2e-26 123.6 72 75.0
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 1.6e-26 123.2 75 73.3
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.5e-26 122.1 103 60.2
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.6e-26 121.7 103 60.2
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.6e-26 121.7 103 60.2
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.6e-26 121.7 103 60.2
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 4.6e-26 121.7 72 75.0
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 6.0e-26 121.3 75 73.3
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 1.3e-25 120.2 84 69.0
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 2.3e-25 119.4 129 50.4
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.0e-25 119.0 92 65.2
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.9e-25 118.6 92 65.2
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 5.6e-24 114.8 73 75.3
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.3e-23 113.6 87 64.4
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.1e-23 112.8 72 69.4
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 4.8e-23 111.7 72 70.8
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 6.2e-23 111.3 74 63.5
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 1.8e-22 109.8 82 67.1
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 6.9e-22 107.8 84 64.3
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 1.2e-21 107.1 84 64.3
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 1.2e-21 107.1 84 64.3
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.2e-21 107.1 84 64.3
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 1.2e-21 107.1 84 64.3
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 1.2e-21 107.1 84 64.3
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.5e-21 106.7 84 63.1
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.5e-21 106.7 84 63.1
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 1.5e-21 106.7 84 63.1
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.5e-21 106.7 96 58.3
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.5e-21 106.7 76 67.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.0e-21 106.3 84 61.9
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.0e-21 106.3 84 61.9
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.0e-21 106.3 84 61.9
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 3.4e-21 105.5 84 63.1
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 7.6e-21 104.4 70 70.0
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 4.9e-20 101.7 57 75.4
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.5e-19 99.4 53 86.8
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 6.0e-18 94.7 63 68.3
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 7.9e-18 94.4 55 72.7
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 7.9e-18 94.4 55 72.7
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 7.9e-18 94.4 55 72.7
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 7.9e-18 94.4 55 72.7
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 7.9e-18 94.4 55 72.7
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 8.7e-17 90.9 55 70.9
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 2.5e-16 89.4 121 45.5
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 4.3e-16 88.6 75 61.3
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.3e-16 88.6 75 61.3
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.7e-16 88.2 75 61.3
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 5.7e-16 88.2 63 63.5
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.3e-15 87.0 67 59.7
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.3e-15 87.0 67 59.7
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 2.2e-15 86.3 71 62.0
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.7e-15 85.5 67 58.2
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 4.8e-15 85.1 73 57.5
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 4.8e-15 85.1 52 69.2
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.1e-14 82.0 83 50.6
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 4.5e-13 78.6 76 47.4
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 7.7e-13 77.8 91 45.1
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-12 77.0 66 57.6
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.3e-12 77.0 66 57.6
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.0e-12 75.1 61 55.7
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 5.5e-11 71.6 74 55.4
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 2.7e-10 69.3 72 44.4
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.0e-09 67.4 58 48.3
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.8e-09 66.6 53 56.6
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 5.1e-09 65.1 69 44.9
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-08 63.9 35 77.1
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-08 63.9 35 77.1
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.1e-08 63.9 35 77.1
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.5e-08 63.5 47 61.7
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 7.4e-08 61.2 74 48.6
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.7e-08 60.8 45 62.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 3.7e-07 58.9 65 43.1
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 3.7e-07 58.9 37 70.3
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.3e-07 58.2 74 44.6
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.1e-06 57.4 65 43.1
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.1e-06 57.4 36 66.7
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.4e-06 56.2 39 64.1
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 4.1e-06 55.5 43 62.8
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 6.9e-06 54.7 57 54.4


User provided reference genes

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