Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0051300 Salix brachista HOM05D000144 ORTHO05D349857 8.9e-87 323.6 162 100.0
Potri.005G135500 Populus trichocarpa HOM05D000144 ORTHO05D003364 1.2e-11 73.9 102 45.1
CiPaw.06G142000 Carya illinoinensis HOM05D000144 ORTHO05D003364 5.2e-10 68.6 100 42.0
Lj1g0000634 Lotus japonicus HOM05D000144 ORTHO05D003364 1.2e-09 67.4 103 38.8
Haze_01886 Corylus avellana HOM05D000144 ORTHO05D003364 1.5e-09 67.0 102 40.2
Gohir.A10G092800 Gossypium hirsutum HOM05D000144 ORTHO05D003364 2.0e-09 66.6 102 40.2
Gohir.D10G095600 Gossypium hirsutum HOM05D000144 ORTHO05D003364 2.0e-09 66.6 102 40.2
Gorai.011G104900 Gossypium raimondii HOM05D000144 ORTHO05D003364 2.0e-09 66.6 102 40.2
arahy.Tifrunner.gnm1.ann1.FR68PK Arachis hypogaea HOM05D000144 ORTHO05D003364 2.6e-09 66.2 104 37.5
Actinidia14017 Actinidia chinensis HOM05D000144 ORTHO05D003364 3.4e-09 65.9 103 41.7
Actinidia36506 Actinidia chinensis HOM05D000144 ORTHO05D003364 3.4e-09 65.9 103 41.7
MD15G1280000 Malus domestica HOM05D000144 ORTHO05D003364 3.4e-09 65.9 96 41.7
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 4.4e-09 65.5 99 41.4
CiPaw.05G054800 Carya illinoinensis HOM05D000144 ORTHO05D003364 7.5e-09 64.7 102 40.2
MD02G1167800 Malus domestica HOM05D000144 ORTHO05D003364 9.8e-09 64.3 102 40.2
Sabra07G0036300 Salix brachista HOM05D000144 ORTHO05D003364 9.8e-09 64.3 102 43.1
Thecc.01G051500 Theobroma cacao HOM05D000144 ORTHO05D003364 9.8e-09 64.3 107 39.3
Cfa005430 Carpinus fangiana HOM05D000144 ORTHO05D003364 1.3e-08 63.9 102 39.2
Glyma.02G134800 Glycine max HOM05D000144 ORTHO05D003364 1.3e-08 63.9 107 37.4
TAR381G0616 Trochodendron aralioides HOM05D000144 ORTHO05D003364 1.7e-08 63.5 102 43.1
COL.COLO4_11368 Corchorus olitorius HOM05D000144 ORTHO05D003364 2.2e-08 63.2 106 40.6
FvH4_2g06830 Fragaria vesca HOM05D000144 ORTHO05D003364 2.2e-08 63.2 99 37.4
VMungo0251G0464 Vigna mungo HOM05D000144 ORTHO05D003364 2.2e-08 63.2 107 37.4
Atru.chr5.2808 Acer truncatum HOM05D000144 ORTHO05D003364 2.8e-08 62.8 102 36.3
CANSAT25G3887 Cannabis sativa HOM05D000144 ORTHO05D003364 2.8e-08 62.8 105 39.0
FAN20G0955 Fragaria x ananassa HOM05D000144 ORTHO05D003364 2.8e-08 62.8 99 37.4
FAN24G0266 Fragaria x ananassa HOM05D000144 ORTHO05D003364 2.8e-08 62.8 99 37.4
FAN27G2452 Fragaria x ananassa HOM05D000144 ORTHO05D003364 2.8e-08 62.8 99 37.4
QL03p002401 Quercus lobata HOM05D000144 ORTHO05D003364 2.8e-08 62.8 103 41.7
QL06p042523 Quercus lobata HOM05D000144 ORTHO05D003364 2.8e-08 62.8 103 41.7
Glyma.07G210200 Glycine max HOM05D000144 ORTHO05D003364 3.7e-08 62.4 107 37.4
Lalb_Chr05g0219011 Lupinus albus HOM05D000144 ORTHO05D003364 3.7e-08 62.4 106 37.7
RcHm_v2.0_Chr6g0259041 Rosa chinensis HOM05D000144 ORTHO05D003364 3.7e-08 62.4 106 38.7
Cc07_g05790 Coffea canephora HOM05D000144 ORTHO05D003364 4.9e-08 62.0 155 32.3
Potri.007G040100 Populus trichocarpa HOM05D000144 ORTHO05D003364 4.9e-08 62.0 106 39.6
Cfa003988 Carpinus fangiana HOM05D000144 ORTHO05D003364 6.3e-08 61.6 103 38.8
Haze_15436 Corylus avellana HOM05D000144 ORTHO05D003364 6.3e-08 61.6 103 38.8
Lj4A139G82 Lonicera japonica HOM05D000144 ORTHO05D003364 6.3e-08 61.6 102 40.2
arahy.Tifrunner.gnm1.ann1.W8GZLX Arachis hypogaea HOM05D000144 ORTHO05D003364 8.3e-08 61.2 107 36.4
Lsat_1_v5_gn_4_168960 Lactuca sativa HOM05D000144 ORTHO05D003364 8.3e-08 61.2 102 35.3
Nn5g30171 Nelumbo nucifera HOM05D000144 ORTHO05D003364 8.3e-08 61.2 106 38.7
vmacro05319 Vaccinium macrocarpon HOM05D000144 ORTHO05D003364 8.3e-08 61.2 100 38.0
arahy.Tifrunner.gnm1.ann1.ZBIL8C Arachis hypogaea HOM05D000144 ORTHO05D003364 1.1e-07 60.8 107 36.4
CiPaw.01G022500 Carya illinoinensis HOM05D000144 ORTHO05D003364 1.1e-07 60.8 101 39.6
Ciclev10028706m.g Citrus clementina HOM05D000144 ORTHO05D003364 1.1e-07 60.8 105 37.1
Lalb_Chr09g0328161 Lupinus albus HOM05D000144 ORTHO05D003364 1.1e-07 60.8 104 37.5
COL.COLO4_11717 Corchorus olitorius HOM05D000144 ORTHO05D003364 1.4e-07 60.5 100 37.0
Atru.chr3.411 Acer truncatum HOM05D000144 ORTHO05D003364 1.8e-07 60.1 103 39.8
Glyma.17G177600 Glycine max HOM05D000144 ORTHO05D003364 1.8e-07 60.1 101 37.6
SEGI_38240 Sequoiadendron giganteum HOM05D000144 ORTHO05D003364 1.8e-07 60.1 103 35.0
Ah.01g006740 Amaranthus hybridus HOM05D000144 ORTHO05D003364 2.4e-07 59.7 107 36.4
Carub.0003s2970 Capsella rubella HOM05D000144 ORTHO05D003364 2.4e-07 59.7 106 36.8
Phvul.003G294200 Phaseolus vulgaris HOM05D000144 ORTHO05D003364 2.4e-07 59.7 107 37.4
QL11p038266 Quercus lobata HOM05D000144 ORTHO05D003364 2.4e-07 59.7 102 38.2
TAR625G0057 Trochodendron aralioides HOM05D000144 ORTHO05D003364 2.4e-07 59.7 106 38.7
VMungo0251G2020 Vigna mungo HOM05D000144 ORTHO05D003364 2.4e-07 59.7 101 36.6
FAN15G1273 Fragaria x ananassa HOM05D000144 ORTHO05D003364 3.1e-07 59.3 99 36.4
Glyma.05G080800 Glycine max HOM05D000144 ORTHO05D003364 3.1e-07 59.3 100 37.0
MBI02_g32603_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D003364 3.1e-07 59.3 101 37.6
Thecc.02G096200 Theobroma cacao HOM05D000144 ORTHO05D003364 3.1e-07 59.3 105 37.1
Aqoxy6G01434 Aquilegia oxysepala HOM05D000144 ORTHO05D003364 4.1e-07 58.9 99 40.4
arahy.Tifrunner.gnm1.ann1.UWC05Z Arachis hypogaea HOM05D000144 ORTHO05D003364 4.1e-07 58.9 105 35.2
Eucgr.I01174 Eucalyptus grandis HOM05D000144 ORTHO05D003364 4.1e-07 58.9 100 33.0
Gohir.A12G082500 Gossypium hirsutum HOM05D000144 ORTHO05D003364 4.1e-07 58.9 106 37.7
TAR628G1316 Trochodendron aralioides HOM05D000144 ORTHO05D003364 4.1e-07 58.9 101 36.6
vmacro02177 Vaccinium macrocarpon HOM05D000144 ORTHO05D003364 4.1e-07 58.9 105 36.2
AT2G15790 Arabidopsis thaliana HOM05D000144 ORTHO05D003364 5.4e-07 58.5 106 35.8
arahy.Tifrunner.gnm1.ann1.97HGFF Arachis hypogaea HOM05D000144 ORTHO05D003364 5.4e-07 58.5 105 35.2
CSS0019823 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D003364 5.4e-07 58.5 98 38.8
CSS0038266 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D003364 5.4e-07 58.5 98 38.8
Ca_18663_v3 Cicer arietinum L. HOM05D000144 ORTHO05D003364 5.4e-07 58.5 107 33.6
EL10Ac9g21823 Beta vulgaris HOM05D000144 ORTHO05D003364 7.0e-07 58.2 106 37.7
Gohir.D13G036300 Gossypium hirsutum HOM05D000144 ORTHO05D003364 7.0e-07 58.2 105 38.1
Gorai.008G073900 Gossypium raimondii HOM05D000144 ORTHO05D003364 7.0e-07 58.2 105 37.1
Gorai.013G041000 Gossypium raimondii HOM05D000144 ORTHO05D003364 7.0e-07 58.2 105 38.1
HanXRQChr14g0430681 Helianthus annuus HOM05D000144 ORTHO05D003364 7.0e-07 58.2 102 34.3
MBI06_g07362_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D003364 7.0e-07 58.2 107 37.4
Phvul.003G246400 Phaseolus vulgaris HOM05D000144 ORTHO05D003364 7.0e-07 58.2 99 36.4
Pp3c12_18980 Physcomitrium patens HOM05D000144 ORTHO05D003364 7.0e-07 58.2 99 35.4
Rhsim10G0121100 Rhododendron simsii HOM05D000144 ORTHO05D003364 7.0e-07 58.2 95 35.8
Actinidia00463 Actinidia chinensis HOM05D000144 ORTHO05D003364 9.2e-07 57.8 107 33.6
Cpa.g.sc6.387 Carica papaya HOM05D000144 ORTHO05D003364 9.2e-07 57.8 105 38.1
Gohir.D03G020200 Gossypium hirsutum HOM05D000144 ORTHO05D003364 9.2e-07 57.8 106 37.7
Gorai.003G021400 Gossypium raimondii HOM05D000144 ORTHO05D003364 9.2e-07 57.8 106 37.7
CSS0000828 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D003364 1.2e-06 57.4 99 38.4
AUR62016632 Chenopodium quinoa HOM05D000144 ORTHO05D003364 1.2e-06 57.4 100 38.0
Thhalv10022753m.g Eutrema salsugineum HOM05D000144 ORTHO05D003364 1.2e-06 57.4 106 35.8
PSO170G1556 Papaver somniferum HOM05D000144 ORTHO05D003364 1.2e-06 57.4 104 35.6
Peaxi162Scf00016g01634 Petunia axillaris HOM05D000144 ORTHO05D003364 1.2e-06 57.4 100 37.0
Prupe.8G116600 Prunus persica HOM05D000144 ORTHO05D003364 1.2e-06 57.4 105 38.1
GSVIVG01031799001 Vitis vinifera HOM05D000144 ORTHO05D003364 1.2e-06 57.4 104 35.6
ATR0661G011 Amborella trichopoda HOM05D000144 ORTHO05D003364 1.6e-06 57.0 107 34.6
Dinv42127 Davidia involucrata HOM05D000144 ORTHO05D003364 1.6e-06 57.0 104 36.5
PSO017G5419 Papaver somniferum HOM05D000144 ORTHO05D003364 1.6e-06 57.0 104 35.6
vmacro17928 Vaccinium macrocarpon HOM05D000144 ORTHO05D003364 1.6e-06 57.0 104 37.5
CSS0007265 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D003364 2.0e-06 56.6 106 35.8
Gohir.A13G037900 Gossypium hirsutum HOM05D000144 ORTHO05D003364 2.0e-06 56.6 105 37.1
Lj4g0010067 Lotus japonicus HOM05D000144 ORTHO05D003364 2.0e-06 56.6 99 36.4
Nitab4.5_0000310g0240 Nicotiana tabacum HOM05D000144 ORTHO05D003364 2.0e-06 56.6 151 27.2
TWI75G0025 Tripterygium wilfordii HOM05D000144 ORTHO05D003364 2.0e-06 56.6 107 36.4
Ah.01g020090 Amaranthus hybridus HOM05D000144 ORTHO05D003364 2.7e-06 56.2 106 35.8
ECA236G0775 Erigeron canadensis HOM05D000144 ORTHO05D003364 2.7e-06 56.2 106 35.8
Gohir.D02G212200 Gossypium hirsutum HOM05D000144 ORTHO05D003364 2.7e-06 56.2 106 35.8
Gorai.005G240200 Gossypium raimondii HOM05D000144 ORTHO05D003364 2.7e-06 56.2 106 35.8
HanXRQChr16g0508751 Helianthus annuus HOM05D000144 ORTHO05D003364 2.7e-06 56.2 102 34.3
MD05G1075200 Malus domestica HOM05D000144 ORTHO05D003364 2.7e-06 56.2 105 37.1
Os06g0216800 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D003364 2.7e-06 56.2 100 34.0
Sopen02g035160 Solanum pennellii HOM05D000144 ORTHO05D003364 2.7e-06 56.2 103 34.0
Nitab4.5_0002462g0080 Nicotiana tabacum HOM05D000144 ORTHO05D003364 3.5e-06 55.8 103 35.9
PGR092G0001 Punica granatum HOM05D000144 ORTHO05D003364 3.5e-06 55.8 103 34.0
PGR119G0608 Punica granatum HOM05D000144 ORTHO05D003364 3.5e-06 55.8 105 34.3
Rhsim11G0168800 Rhododendron simsii HOM05D000144 ORTHO05D003364 3.5e-06 55.8 106 34.0
PGSC0003DMG400010060 Solanum tuberosum HOM05D000144 ORTHO05D003364 3.5e-06 55.8 151 28.5
THA.LOC104819588 Tarenaya hassleriana HOM05D000144 ORTHO05D003364 3.5e-06 55.8 105 35.2
BcaB03g16329 Brassica carinata HOM05D000144 ORTHO05D003364 4.5e-06 55.5 106 34.0
C07p08000 Brassica napus HOM05D000144 ORTHO05D003364 4.5e-06 55.5 100 32.0
CARHR106170 Cardamine hirsuta HOM05D000144 ORTHO05D003364 4.5e-06 55.5 106 34.9
CsaV3_7G008790 Cucumis sativus L. HOM05D000144 ORTHO05D003364 4.5e-06 55.5 103 35.9
Medtr4g086760 Medicago truncatula HOM05D000144 ORTHO05D003364 4.5e-06 55.5 102 33.3
Nitab4.5_0005583g0060 Nicotiana tabacum HOM05D000144 ORTHO05D003364 4.5e-06 55.5 98 35.7
Peaxi162Scf00993g00331 Petunia axillaris HOM05D000144 ORTHO05D003364 4.5e-06 55.5 99 35.4
Potri.009G106200 Populus trichocarpa HOM05D000144 ORTHO05D003364 4.5e-06 55.5 102 36.3
Sp3g29120 Schrenkiella parvula HOM05D000144 ORTHO05D003364 4.5e-06 55.5 106 34.9
HPP92_027229 Vanilla planifolia HOM05D000144 ORTHO05D003364 4.5e-06 55.5 103 34.0
Zm00001eb279240 Zea mays HOM05D000144 ORTHO05D003364 4.5e-06 55.5 106 34.9
MSTRG.5366 Avicennia marina HOM05D000144 ORTHO05D003364 5.9e-06 55.1 103 35.9
BcaC06g36086 Brassica carinata HOM05D000144 ORTHO05D003364 5.9e-06 55.1 100 32.0
AUR62001959 Chenopodium quinoa HOM05D000144 ORTHO05D003364 5.9e-06 55.1 150 26.7
FvH4_1g15560 Fragaria vesca HOM05D000144 ORTHO05D003364 5.9e-06 55.1 101 34.7
FAN19G0626 Fragaria x ananassa HOM05D000144 ORTHO05D003364 5.9e-06 55.1 101 34.7
Hma1.2p1_1589F.1_g292400 Hydrangea macrophylla HOM05D000144 ORTHO05D003364 5.9e-06 55.1 105 34.3
Hma1.2p1_2598F.1_g325160 Hydrangea macrophylla HOM05D000144 ORTHO05D003364 5.9e-06 55.1 105 34.3
Lalb_Chr09g0333691 Lupinus albus HOM05D000144 ORTHO05D003364 7.7e-06 54.7 103 36.9
Rhsim08G0103300 Rhododendron simsii HOM05D000144 ORTHO05D003364 7.7e-06 54.7 104 36.5
SMO116G0346 Selaginella moellendorffii HOM05D000144 ORTHO05D003364 7.7e-06 54.7 104 35.6
TPR.G39337 Trifolium pratense HOM05D000144 ORTHO05D003364 7.7e-06 54.7 102 31.4


User provided reference genes

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