Gene: AT2G15790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G15790
  • Transcript Identifier AT2G15790.1
  • Gene Type Coding gene
  • Location Chr2 : 6878144-6880743 : negative

Gene Family Information

  • ID HOM05D000144
  • #Genes/#Species 2569/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G15790.1
  • symbol SQN
  • Alias CYP40,CYCLOPHILIN 40
  • full_name SQUINT
  • uniprot Q9C566

Descriptions

  • Description peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
  • Computational description SQUINT (SQN); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G63400.3); Has 20219 Blast hits to 19939 proteins in 2706 species: Archae - 114; Bacteria - 6925; Metazoa - 4764; Fungi - 1760; Plants - 1912; Viruses - 4; Other Eukaryotes - 4740 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006457
IEA
GOA Databaseprotein folding
GO:0006457
IBA
Gene Ontologyprotein folding1
GO:0000413
IEA
GOA Databaseprotein peptidyl-prolyl isomerization
GO:0000413
IBA
Gene Ontologyprotein peptidyl-prolyl isomerization1
GO:0000413
IEA
InterProprotein peptidyl-prolyl isomerization
GO:0010582
IGI
Gene Ontologyfloral meristem determinacy2
GO:0010050
IMP
Gene Ontologyvegetative phase change3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003755
IEA
GOA Databasepeptidyl-prolyl cis-trans isomerase activity
GO:0003755
ISS, IBA
Gene Ontologypeptidyl-prolyl cis-trans isomerase activity1 3
GO:0003755
IEA
InterPropeptidyl-prolyl cis-trans isomerase activity
GO:0005515
IEA
InterProprotein binding
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0016018
IBA
Gene Ontologycyclosporin A binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
ISM, IBA
Gene Ontologycytoplasm1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR019734 Tetratricopeptide repeat
IPR013105 Tetratricopeptide repeat 2
IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
IPR029000 Cyclophilin-like domain superfamily
Mapman id Description
16.9.2.8 RNA processing.mRNA silencing.miRNA pathway.AGO1-regulatory protein (SQN)
18.13.1 Protein modification.protein folding.protein folding catalyst (Cyclophilin)