Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 0.0e+00 1261.1 634 100.0
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.8e-306 1054.3 558 96.1
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 8.4e-282 973.4 533 91.4
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.1e-194 681.8 534 62.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.8e-167 593.6 535 57.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 7.9e-163 578.2 532 55.6
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 3.9e-162 575.9 542 54.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 5.3e-159 565.5 530 53.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 9.3e-156 554.7 548 52.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.9e-154 549.3 539 52.5
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.3e-153 545.8 535 53.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 9.7e-153 544.7 534 52.8
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 6.3e-152 542.0 533 52.5
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.1e-151 541.2 539 51.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.4e-151 540.8 537 52.9
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.1e-151 539.3 533 52.7
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.1e-151 539.3 537 53.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 6.9e-151 538.5 535 52.0
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 4.5e-150 535.8 529 52.4
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 7.7e-150 535.0 547 51.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.3e-149 534.3 534 52.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.9e-149 533.1 534 50.7
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.9e-149 533.1 535 52.3
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.8e-149 532.7 535 50.3
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.9e-148 530.4 536 52.1
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 7.2e-148 528.5 541 51.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.6e-147 527.3 530 51.1
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.1e-147 526.9 535 50.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.6e-147 526.2 534 50.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.8e-146 523.9 542 50.7
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.9e-146 522.7 532 51.3
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 5.1e-146 522.3 537 49.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 6.7e-146 521.9 547 50.6
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 8.8e-146 521.5 545 50.6
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.3e-145 519.6 538 50.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.3e-144 517.7 534 50.6
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.8e-144 515.8 544 50.7
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.4e-143 513.5 545 51.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.5e-142 510.8 536 50.6
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.0e-142 510.4 539 49.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.4e-142 509.6 548 50.2
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-141 506.9 538 50.2
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 5.0e-141 505.8 534 49.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.1e-140 504.6 538 49.4
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.4e-140 504.2 537 50.1
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.2e-140 503.1 536 49.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 5.5e-140 502.3 532 51.1
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 7.2e-140 501.9 532 49.6
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.4e-140 501.5 539 50.1
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-139 501.1 535 50.1
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.2e-139 501.1 535 49.2
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.0e-138 496.5 537 49.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.7e-138 495.4 531 50.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.8e-138 495.0 528 49.2
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-137 494.2 531 49.9
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.6e-137 493.4 531 48.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.6e-137 493.4 532 48.7
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.3e-137 493.0 529 49.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.4e-135 486.9 456 55.5
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-135 486.5 533 48.8
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 4.5e-134 482.6 544 47.2
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 4.5e-134 482.6 539 47.1
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.7e-133 480.7 529 48.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.2e-133 480.3 552 46.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.9e-132 477.2 535 47.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.6e-131 474.2 550 45.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.7e-131 472.6 559 46.3
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.3e-130 470.3 544 46.7
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.1e-129 468.0 536 46.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.5e-129 467.6 533 47.3
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.7e-128 464.2 444 54.7
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-127 461.5 537 46.2
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 4.1e-127 459.5 562 45.6
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.6e-126 457.6 538 47.2
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.7e-125 454.1 541 45.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.5e-125 452.2 558 45.9
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.2e-124 449.5 533 46.9
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 7.2e-124 448.7 537 45.3
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 6.1e-123 445.7 539 46.4
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.2e-122 442.6 556 43.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 9.8e-121 438.3 547 45.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.4e-119 433.7 540 46.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.2e-117 427.2 530 43.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 3.8e-117 426.4 530 43.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.0e-117 426.0 547 43.1
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.9e-116 424.1 537 44.7
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.3e-112 411.4 539 43.2
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.8e-111 407.5 532 43.4
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 7.7e-110 402.1 531 42.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 7.7e-110 402.1 531 42.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 7.7e-110 402.1 531 42.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.0e-109 401.7 532 42.7
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.6e-107 393.3 595 40.0
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.6e-107 393.3 536 42.5
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.0e-106 389.8 422 50.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 8.9e-106 388.7 532 41.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.7e-105 386.0 531 41.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.6e-99 367.9 533 42.0
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 6.2e-99 365.9 550 38.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.7e-96 357.8 532 39.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 4.0e-90 336.7 466 41.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 7.8e-86 322.4 492 40.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 6.6e-85 319.3 557 37.2
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.5e-81 308.1 513 38.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 4.4e-81 306.6 307 52.8
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.1e-78 297.7 333 49.2
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.3e-77 295.0 577 34.0
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.0e-74 283.5 285 49.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 5.2e-74 283.1 619 30.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.4e-73 280.4 326 50.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 9.9e-73 278.9 416 40.9
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.2e-71 273.5 303 48.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 8.1e-67 259.2 330 43.9
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.2e-57 228.8 573 30.9
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.4e-57 227.3 226 49.6
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.0e-53 215.7 562 30.2
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 8.7e-45 186.0 201 45.8
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-44 185.3 388 32.5
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 9.6e-44 182.6 565 27.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 3.2e-39 167.5 296 34.1
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.5e-36 157.9 555 26.3
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.1e-31 142.5 182 44.5
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.6e-30 138.7 336 30.4
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.0e-25 121.7 128 50.0
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.4e-23 115.5 121 49.6
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 3.6e-22 110.9 110 47.3
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 2.3e-21 108.2 296 28.4
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.3e-20 104.4 205 32.2
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 7.0e-18 96.7 243 33.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.6e-17 94.7 199 35.7
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-16 92.8 187 36.4
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.6e-14 84.3 127 33.9
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 6.1e-14 83.6 92 43.5
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.0e-13 81.3 147 38.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.3e-12 77.8 71 64.8
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.1e-10 69.7 85 43.5
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-08 65.1 113 38.9
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.0e-08 63.9 58 56.9
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.9e-07 62.0 158 31.6
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-07 61.6 157 32.5
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 4.2e-07 60.8 188 23.9
Manes.09G018200 Manihot esculenta HOM05D001573 ORTHO05D001660 9.4e-07 59.7 246 24.0
AUR62024476 Chenopodium quinoa HOM05D001573 ORTHO05D001660 8.0e-06 56.6 245 23.7
AUR62026065 Chenopodium quinoa HOM05D001573 ORTHO05D001660 8.0e-06 56.6 245 23.7
Manes.08G052800 Manihot esculenta HOM05D001573 ORTHO05D001660 8.0e-06 56.6 246 23.6
TWI53G1442 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 8.0e-06 56.6 247 24.3


User provided reference genes

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