Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 0.0e+00 1112.8 808 100.0
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.9e-172 608.6 781 75.8
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.0e-170 602.4 675 81.3
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.7e-157 559.7 730 74.2
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 9.4e-145 518.5 733 70.3
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 5.2e-143 512.7 733 70.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 4.4e-142 509.6 706 71.8
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 7.5e-142 508.8 797 66.9
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 6.3e-141 505.8 722 53.7
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 7.7e-139 498.8 804 67.7
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 6.6e-138 495.7 656 74.1
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 9.5e-137 491.9 778 67.2
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.6e-136 491.1 760 67.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 5.2e-135 486.1 813 66.3
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 8.9e-135 485.3 707 52.9
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 8.9e-135 485.3 792 66.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.6e-134 483.8 810 65.7
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.6e-134 483.8 800 65.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 9.8e-134 481.9 769 67.5
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.3e-133 481.5 797 66.0
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 4.9e-133 479.6 762 60.6
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.1e-132 478.4 737 67.3
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.8e-132 477.6 713 70.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 9.2e-132 475.3 720 68.9
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.0e-131 474.2 706 70.1
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.7e-131 473.8 792 65.7
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 4.6e-131 473.0 663 74.4
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 8.0e-128 462.2 708 68.8
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-127 460.7 769 67.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.3e-127 460.7 763 65.4
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 4.0e-127 459.9 846 55.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 5.2e-127 459.5 739 68.3
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 8.9e-127 458.8 724 68.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.5e-126 458.0 752 66.6
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 5.8e-126 456.1 749 64.6
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.2e-125 454.1 746 66.8
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 6.4e-125 452.6 739 67.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.9e-124 451.1 797 65.4
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 5.4e-124 449.5 772 56.1
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 8.6e-122 442.2 800 65.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.1e-121 441.8 731 66.6
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.5e-121 440.7 726 66.9
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.3e-121 439.9 785 52.4
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.1e-119 433.7 702 68.4
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 9.8e-118 428.7 788 65.5
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.9e-117 427.2 690 68.0
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.6e-115 421.4 729 65.0
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.6e-115 421.4 717 67.8
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.0e-114 418.7 699 66.1
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 6.6e-114 416.0 747 63.5
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.1e-113 415.2 708 66.7
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 1.5e-113 414.8 709 66.4
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 7.3e-113 412.5 726 63.1
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.8e-112 410.6 710 66.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 4.0e-111 406.8 691 66.9
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 6.8e-111 406.0 742 65.0
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 3.8e-109 400.2 679 69.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.4e-108 397.5 797 46.8
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 7.1e-108 396.0 754 64.2
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.5e-107 393.7 693 42.4
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.3e-106 391.7 699 66.1
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.3e-106 391.7 743 48.0
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 3.3e-105 387.1 699 66.0
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.3e-105 387.1 747 52.7
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 4.3e-105 386.7 732 64.8
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 2.8e-104 384.0 789 63.1
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-103 382.1 733 64.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.3e-101 375.2 703 63.6
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.7e-101 374.8 888 45.9
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.9e-101 374.0 680 66.5
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 7.1e-100 369.4 745 51.7
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 4.8e-96 356.7 722 55.5
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 9.0e-95 352.4 678 63.9
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.6e-94 349.4 727 60.2
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 3.8e-93 347.1 685 49.2
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.4e-92 345.1 653 65.8
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 3.5e-91 340.5 610 67.5
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.0e-90 337.4 638 64.7
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.0e-90 337.4 638 64.7
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 5.1e-90 336.7 583 60.2
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 9.6e-89 332.4 671 63.0
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 4.8e-88 330.1 756 59.3
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.1e-87 328.9 675 64.4
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 4.0e-87 327.0 675 64.1
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.5e-86 323.6 735 55.5
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 7.6e-86 322.8 707 62.2
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 9.9e-86 322.4 694 62.2
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 3.8e-85 320.5 734 59.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 5.5e-84 316.6 696 62.4
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 4.6e-83 313.5 694 63.3
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 6.0e-83 313.2 606 67.2
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.0e-82 312.4 746 61.0
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 6.7e-82 309.7 696 62.1
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-81 308.9 669 64.9
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.3e-80 305.4 746 62.2
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 3.7e-80 303.9 720 63.2
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 3.7e-80 303.9 708 61.9
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.1e-79 302.4 707 59.4
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.1e-79 300.8 696 62.9
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 4.0e-79 300.4 696 54.2
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 9.0e-79 299.3 693 63.2
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 1.5e-78 298.5 705 60.1
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 2.6e-78 297.7 746 59.7
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 3.4e-78 297.4 745 60.0
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.9e-73 281.6 351 51.0
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 5.0e-69 266.9 431 45.5
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.4e-65 253.1 344 49.7
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.8e-63 248.4 292 51.4
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 3.3e-57 227.6 578 49.8
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 2.8e-56 224.6 234 58.5
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.1e-55 222.6 183 65.6
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 2.9e-53 214.5 183 63.9
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 6.1e-51 206.8 522 64.9
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 3.1e-47 194.5 192 57.8
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 7.0e-47 193.4 380 39.5
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.5e-46 191.0 166 59.6
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-45 187.6 509 65.0
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 5.0e-45 187.2 482 66.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 6.5e-45 186.8 348 45.7
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 9.4e-44 183.0 518 63.7
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.3e-40 172.6 495 37.0
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.7e-40 172.2 254 46.9
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 1.0e-37 162.9 206 51.9
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.2e-35 156.0 115 67.0
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-35 155.6 516 62.0
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.0e-35 153.3 511 62.4
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 5.2e-34 150.6 161 52.2
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-32 145.2 516 57.4
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 1.4e-31 142.5 159 49.7
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.8e-31 142.1 77 84.4
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-30 139.4 78 82.1
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 8.6e-29 133.3 122 66.4
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 7.2e-28 130.2 599 54.8
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-27 129.0 158 55.7
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.0e-26 124.8 300 39.7
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 4.0e-26 124.4 175 47.4
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.6e-25 121.7 175 46.3
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 3.4e-25 121.3 260 38.1
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 3.4e-25 121.3 146 50.0
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 5.4e-23 114.0 153 43.1
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.8e-19 101.7 165 48.5
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.8e-19 101.7 318 34.0
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.4e-15 88.6 59 71.2
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.6e-14 85.9 71 60.6
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 2.7e-14 85.1 74 59.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.8e-14 83.6 157 39.5
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.0e-13 83.2 91 44.0
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.3e-12 78.2 94 47.9
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 3.3e-12 78.2 47 80.9
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 3.3e-12 78.2 47 80.9
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 7.3e-12 77.0 64 59.4
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-11 76.3 160 35.6
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 2.1e-11 75.5 94 39.4
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 4.7e-11 74.3 48 66.7
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-10 72.4 98 50.0
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.2e-10 70.9 79 55.7
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.8e-10 70.5 98 49.0
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-10 70.1 98 49.0
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-10 70.1 98 49.0
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-10 70.1 75 58.7
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.2e-09 69.7 184 28.3
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-09 69.7 97 48.5
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-09 69.3 75 58.7
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.4e-09 68.2 98 46.9
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-09 67.8 98 48.0
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.4e-09 67.8 48 64.6
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 7.5e-09 67.0 88 47.7
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 9.8e-09 66.6 58 60.3
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 9.8e-09 66.6 54 64.8
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 1.3e-08 66.2 91 46.2
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.3e-08 66.2 96 42.7
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-08 65.9 75 54.7
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-08 65.9 75 54.7
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.7e-08 64.7 155 32.3
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 3.7e-08 64.7 47 68.1
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 6.4e-08 63.9 98 48.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-07 63.2 157 34.4
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-07 62.8 155 33.5
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.1e-07 61.2 156 34.6
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-07 60.5 155 33.5
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 1.2e-06 59.7 127 37.0


User provided reference genes

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