Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 0.0e+00 1122.8 587 100.0
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.3e-296 1020.0 610 88.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.4e-259 899.4 607 78.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-248 863.2 631 75.3
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.9e-244 848.6 615 73.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.8e-241 839.3 610 72.0
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 6.9e-238 827.4 614 73.0
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.5e-237 824.7 626 69.0
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 7.1e-235 817.4 602 71.6
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 1.8e-233 812.8 625 70.6
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.7e-232 807.7 618 71.0
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.8e-231 805.4 616 70.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.8e-231 805.4 626 67.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 4.8e-231 804.7 626 68.1
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.4e-230 802.4 615 69.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.0e-230 800.4 626 70.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.2e-229 800.0 626 67.3
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 3.4e-229 798.5 629 69.8
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.2e-228 795.8 597 71.4
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.0e-228 794.7 615 69.1
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.5e-228 794.3 625 67.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 8.5e-228 793.9 635 67.7
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.1e-226 789.3 617 69.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.3e-224 781.6 615 68.3
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-222 776.2 651 64.8
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.3e-217 759.2 617 66.8
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.0e-217 758.8 595 70.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 5.1e-217 758.1 612 66.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.4e-216 754.2 602 66.8
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.7e-215 753.1 619 67.5
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.7e-215 751.9 600 66.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 6.3e-215 751.1 613 65.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.3e-212 743.4 616 67.2
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.7e-212 743.0 614 66.4
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.9e-212 742.3 596 67.8
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 6.5e-212 741.1 533 71.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.5e-212 740.7 619 64.9
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 8.5e-212 740.7 611 66.8
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.9e-211 739.6 624 64.3
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.2e-210 736.9 615 65.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.6e-210 735.3 613 65.7
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.4e-209 733.4 615 65.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.5e-208 729.9 629 65.3
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.6e-208 729.2 616 65.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.8e-207 724.9 617 63.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 8.2e-207 724.2 616 64.3
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.4e-206 722.6 600 65.8
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.4e-206 722.6 657 62.9
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 2.0e-205 719.5 618 63.8
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.6e-205 719.2 589 65.9
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 4.5e-205 718.4 618 62.9
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.2e-204 716.1 529 72.2
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.5e-203 712.6 617 63.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.0e-201 707.2 603 63.8
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.4e-201 706.8 593 64.6
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 9.8e-200 700.7 615 63.1
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 9.8e-200 700.7 679 58.9
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.7e-199 699.9 615 64.4
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.8e-199 699.1 616 63.5
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 2.8e-199 699.1 627 62.4
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.7e-199 698.7 620 63.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.4e-198 696.8 613 64.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.9e-195 686.4 629 61.4
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.5e-195 686.0 617 63.0
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.2e-195 685.6 614 63.7
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 9.4e-195 684.1 638 60.7
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 8.0e-194 681.0 546 68.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.5e-192 676.8 623 61.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.3e-191 671.0 653 58.2
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-190 670.6 619 61.2
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 3.8e-188 662.1 526 66.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.1e-187 660.6 615 60.7
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.1e-187 660.6 654 56.9
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.5e-187 659.4 633 59.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.3e-187 659.1 635 58.7
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 4.2e-187 658.7 614 60.9
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-186 656.0 623 60.5
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 8.0e-186 654.4 614 60.4
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.8e-185 653.3 613 60.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.3e-185 652.9 614 60.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 4.0e-185 652.1 623 60.4
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 8.9e-185 651.0 536 65.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-184 649.4 623 60.0
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.4e-184 648.7 622 60.5
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 3.7e-183 645.6 622 59.6
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 4.9e-183 645.2 628 59.2
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 6.4e-183 644.8 613 59.4
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.4e-183 644.8 588 61.1
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 3.2e-182 642.5 543 63.7
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-179 633.3 622 59.3
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 5.6e-179 631.7 635 59.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.1e-178 629.8 566 61.3
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.7e-175 619.0 499 65.5
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.7e-175 619.0 619 57.4
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.7e-175 619.0 630 57.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 3.0e-172 609.4 615 56.6
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.3e-171 605.9 539 61.4
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 5.8e-168 595.1 621 55.7
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.2e-166 589.3 587 59.5
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.1e-162 576.6 619 54.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 2.3e-161 573.2 540 58.9
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 4.1e-158 562.4 515 61.7
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-154 550.8 622 53.2
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-154 550.4 505 59.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.8e-152 542.0 618 51.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.6e-147 524.6 614 53.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.6e-141 505.8 412 66.5
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.6e-140 501.9 387 68.2
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.3e-139 499.6 339 76.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 8.1e-138 495.0 398 66.8
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.8e-132 477.2 518 53.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.2e-128 464.5 340 71.5
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 4.5e-128 462.6 532 54.1
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-122 444.5 319 71.8
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-121 440.3 615 46.5
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 9.0e-121 438.3 337 68.0
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-99 367.1 390 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 3.2e-86 323.6 646 37.2
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.6e-85 321.2 401 51.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-83 315.1 304 61.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.2e-80 305.1 275 60.0
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.3e-79 301.6 231 69.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-78 296.6 342 51.2
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.6e-77 294.7 273 58.2
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.2e-73 278.9 288 53.5
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 6.6e-71 272.7 275 54.9
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.3e-70 269.2 242 60.7
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.1e-69 267.7 272 53.7
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 4.7e-69 266.5 277 53.8
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.0e-68 265.4 326 52.5
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 4.0e-68 263.5 196 72.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 5.7e-67 259.6 668 33.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 7.8e-64 249.2 681 32.3
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 5.0e-55 219.9 272 53.3
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 5.0e-55 219.9 563 30.9
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.5e-54 218.4 273 49.5
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 7.3e-54 216.1 276 49.3
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.1e-52 210.7 226 49.6
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.0e-52 210.3 126 90.5
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.6e-51 207.6 344 45.9
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.6e-47 192.6 211 53.6
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.1e-45 188.0 192 54.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.1e-41 172.9 151 63.6
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 2.1e-40 171.4 283 39.6
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.1e-37 161.4 144 66.0
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.2e-36 156.8 209 45.0
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.4e-35 154.1 207 45.4
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.4e-35 153.7 298 36.9
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 9.9e-35 152.5 362 34.0
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 5.4e-33 146.7 103 75.7
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 9.3e-33 146.0 98 73.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.8e-29 134.4 105 69.5
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.8e-29 133.7 272 36.0
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 6.9e-28 129.8 157 49.0
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.0e-27 128.3 302 35.1
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.7e-26 125.2 119 58.8
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.6e-24 118.6 160 45.6
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.7e-23 113.2 176 40.3
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 8.7e-23 112.8 117 53.0
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.8e-21 107.1 108 55.6
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 9.9e-19 99.4 52 96.2
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.7e-18 98.6 122 49.2
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.8e-18 97.4 51 96.1
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 4.9e-18 97.1 52 96.2
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.7e-16 91.3 80 57.5
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 3.5e-16 90.9 84 59.5
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-15 88.2 141 41.1
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 3.4e-11 74.3 266 27.4
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 4.9e-10 70.5 50 68.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 7.1e-09 66.6 86 46.5
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-08 65.9 93 48.4
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 7.9e-08 63.2 138 39.9
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.9e-07 60.8 38 89.5
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 8.7e-07 59.7 47 61.7
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 1.1e-06 59.3 121 32.2
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 1.1e-06 59.3 38 86.8
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 5.7e-06 57.0 54 57.4
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 7.4e-06 56.6 55 60.0
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.7e-06 56.2 40 67.5


User provided reference genes

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