Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 2023.4 1009 100.0
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1844.3 1000 92.1
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1228.0 1010 64.0
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1179.9 1006 62.8
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1162.5 1009 60.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1159.4 1017 59.3
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1149.0 942 63.2
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1144.8 951 62.3
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1142.5 1006 60.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1127.5 1054 57.2
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1122.8 1003 59.9
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1111.3 1024 59.2
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1111.3 1008 59.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1102.4 1031 57.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1100.9 1090 55.8
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1096.3 1002 58.3
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1094.7 1001 58.7
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1090.9 1002 57.7
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1088.2 1044 57.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1088.2 1012 59.0
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1080.9 1006 57.9
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1078.5 1017 57.3
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1077.4 1014 58.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.9e-312 1073.5 1044 57.1
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.7e-308 1062.8 740 70.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 9.2e-307 1057.0 1070 53.6
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.2e-306 1056.6 1011 55.4
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.7e-306 1055.4 1018 55.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 6.0e-306 1054.3 1007 56.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-305 1053.1 1016 54.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.3e-304 1048.1 1009 55.7
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 3.1e-302 1042.0 1017 54.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.0e-301 1039.3 1027 53.8
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.4e-301 1038.1 1018 54.5
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.4e-299 1032.3 1027 53.5
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 9.2e-299 1030.4 1013 54.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.9e-297 1025.0 1003 56.3
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 5.1e-297 1024.6 1004 55.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.5e-296 1022.3 1008 55.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 8.9e-294 1013.8 1011 54.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.6e-293 1012.3 1014 55.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-293 1011.1 959 56.7
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.8e-292 1008.4 1008 55.1
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 6.0e-290 1001.1 1007 53.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 7.8e-290 1000.7 1003 54.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 3.0e-289 998.8 1006 54.0
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.9e-289 998.4 1001 54.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.1e-289 998.0 1023 53.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.1e-289 998.0 1019 55.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.1e-289 998.0 1004 54.3
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.6e-289 997.7 1012 54.5
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.1e-286 990.3 1013 54.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.4e-285 985.3 1017 54.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.5e-285 984.9 1031 52.4
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.3e-284 983.4 1020 52.5
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.1e-283 980.3 958 55.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.4e-283 979.2 757 63.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 4.9e-276 954.9 1001 52.7
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.2e-275 951.8 1019 52.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.6e-274 949.9 1001 53.1
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.6e-274 948.3 973 53.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.1e-272 943.7 1029 49.7
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.6e-271 939.9 1034 51.6
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.8e-271 938.3 682 68.5
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.4e-270 936.8 1005 52.7
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 4.0e-270 935.3 1007 52.9
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 6.9e-270 934.5 1011 52.1
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 9.0e-270 934.1 1002 52.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.0e-268 930.6 1019 51.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.7e-268 929.9 1031 52.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.4e-267 926.8 1015 51.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 6.7e-265 917.9 760 61.3
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 9.6e-264 914.1 760 61.1
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.6e-263 913.3 760 61.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.1e-263 912.9 1028 50.9
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.8e-263 911.8 925 53.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 3.1e-262 909.1 776 59.9
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 5.3e-262 908.3 1006 50.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 9.0e-262 907.5 866 57.2
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 3.8e-260 902.1 1073 49.2
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.8e-260 902.1 1017 48.0
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.2e-252 876.3 1024 46.9
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.0e-249 865.9 968 50.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.7e-244 850.1 1008 47.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 9.4e-235 817.8 698 60.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 9.4e-227 791.2 526 72.8
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.0e-225 785.8 565 68.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.5e-219 766.5 798 53.3
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 8.0e-218 761.5 455 80.0
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 9.2e-214 748.0 799 54.1
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.8e-212 742.7 551 66.2
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 5.0e-212 742.3 788 53.0
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 9.8e-208 728.0 1026 42.7
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.3e-207 727.6 862 49.4
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.6e-197 694.1 482 72.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.6e-194 684.1 1050 39.0
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.6e-194 684.1 1151 37.5
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.7e-186 656.0 800 43.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-181 640.2 1014 39.2
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.2e-166 590.1 599 51.4
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-165 587.0 719 44.9
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.7e-162 576.6 1066 36.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.0e-161 573.2 748 43.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-147 526.6 748 41.4
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-144 518.1 458 60.0
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-144 518.1 458 60.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.8e-140 502.3 1004 34.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-137 494.6 486 52.3
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.4e-134 485.0 312 74.7
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.1e-133 481.1 280 81.4
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-132 477.2 604 44.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.2e-126 457.2 364 64.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-122 445.3 622 42.6
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-122 444.5 528 50.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 6.3e-122 443.0 681 43.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.0e-108 397.5 315 65.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 2.3e-103 381.3 481 45.9
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-100 371.3 763 32.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-95 355.5 492 43.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.9e-92 342.8 624 37.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-90 338.6 817 31.7
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.3e-84 318.2 400 43.8
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 7.8e-80 303.1 450 43.6
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 6.8e-76 290.0 645 31.2
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 9.9e-75 286.2 462 39.8
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.2e-69 269.2 158 75.9
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.2e-65 254.2 139 85.6
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.1e-64 251.9 265 49.1
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.3e-63 248.4 397 38.3
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-55 222.6 194 55.7
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.9e-50 204.9 547 32.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.4e-49 201.8 164 64.6
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 5.4e-49 200.7 168 63.7
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 7.1e-49 200.3 718 27.0
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-48 198.0 163 56.4
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 2.3e-47 195.3 115 82.6
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.2e-43 183.0 131 71.0
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.5e-41 174.1 150 60.7
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.3e-39 169.5 339 31.9
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-38 166.4 105 76.2
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.5e-33 148.7 317 36.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.6e-32 146.0 289 32.2
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 9.0e-28 130.2 122 55.7
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.4e-27 128.3 83 79.5
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.9e-27 127.5 88 69.3
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.9e-26 125.2 86 67.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 5.0e-26 124.4 84 72.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.5e-26 123.6 711 23.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.5e-19 102.8 78 64.1
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 4.5e-19 101.3 111 46.8
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.2e-17 94.7 216 38.0
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 8.2e-13 80.5 103 43.7
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.1e-12 78.6 64 57.8
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-10 73.2 77 50.6
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 8.0e-08 63.9 126 35.7
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 1.0e-07 63.5 103 39.8
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.9e-07 61.6 71 47.9


User provided reference genes

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