Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0005400 Salix brachista HOM05D002204 ORTHO05D030794 1.7e-57 225.7 109 100.0
Potri.005G254000 Populus trichocarpa HOM05D002204 ORTHO05D002875 3.3e-45 184.9 105 83.8
Sabra05G0197000 Salix brachista HOM05D002204 ORTHO05D002875 4.1e-43 177.9 102 83.3
Potri.002G007150 Populus trichocarpa HOM05D002204 ORTHO05D030794 3.6e-39 164.9 100 80.0
Manes.05G125100 Manihot esculenta HOM05D002204 ORTHO05D002875 6.1e-31 137.5 100 69.0
Duzib116G0792 Durio zibethinus HOM05D002204 ORTHO05D002875 7.2e-24 114.0 101 53.5
Gohir.A01G103100 Gossypium hirsutum HOM05D002204 ORTHO05D002875 2.1e-23 112.5 101 51.5
Duzib093G0243 Durio zibethinus HOM05D002204 ORTHO05D002875 6.1e-23 110.9 100 51.0
Gohir.D01G088400 Gossypium hirsutum HOM05D002204 ORTHO05D002875 1.0e-22 110.2 101 51.5
Gorai.002G114100 Gossypium raimondii HOM05D002204 ORTHO05D002875 1.4e-22 109.8 101 50.5
Thecc.08G063100 Theobroma cacao HOM05D002204 ORTHO05D002875 1.8e-22 109.4 101 51.5
GSVIVG01013402001 Vitis vinifera HOM05D002204 ORTHO05D002875 2.0e-21 105.9 101 51.5
COL.COLO4_37749 Corchorus olitorius HOM05D002204 ORTHO05D010558 4.4e-21 104.8 101 50.5
TAR628G0862 Trochodendron aralioides HOM05D002204 ORTHO05D002875 9.8e-21 103.6 105 49.5
Haze_22837 Corylus avellana HOM05D002204 ORTHO05D002875 2.8e-20 102.1 105 48.6
CiPaw.07G135500 Carya illinoinensis HOM05D002204 ORTHO05D002875 8.3e-20 100.5 105 46.7
Ciclev10000190m.g Citrus clementina HOM05D002204 ORTHO05D002875 1.2e-18 96.7 102 48.0
QL02p015199 Quercus lobata HOM05D002204 ORTHO05D002875 2.0e-18 95.9 105 43.8
Atru.chr13.93 Acer truncatum HOM05D002204 ORTHO05D030794 1.0e-17 93.6 105 49.5
CANSAT35G2005 Cannabis sativa HOM05D002204 ORTHO05D002875 1.0e-17 93.6 98 45.9
Oeu035852.2 Olea europaea HOM05D002204 ORTHO05D002875 1.0e-17 93.6 102 45.1
Cpa.g.sc26.160 Carica papaya HOM05D002204 ORTHO05D002875 1.9e-16 89.4 102 47.1
MBI08_g06881_MAGBIO Magnolia biondii HOM05D002204 ORTHO05D002875 4.3e-16 88.2 102 44.1
vmacro20620 Vaccinium macrocarpon HOM05D002204 ORTHO05D002875 9.5e-16 87.0 100 48.0
Lj4A810T53 Lonicera japonica HOM05D002204 ORTHO05D002875 6.1e-15 84.3 102 44.1
SalBow7G2538 Salvia bowleyana HOM05D002204 ORTHO05D002875 6.1e-15 84.3 102 42.2
TWI36G0160 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 6.1e-15 84.3 105 42.9
Actinidia22889 Actinidia chinensis HOM05D002204 ORTHO05D002875 3.0e-14 82.0 107 43.0
Cc07_g11990 Coffea canephora HOM05D002204 ORTHO05D002875 5.2e-14 81.3 105 43.8
TAR381G0736 Trochodendron aralioides HOM05D002204 ORTHO05D002875 8.9e-14 80.5 105 40.0
Rhsim10G0192900 Rhododendron simsii HOM05D002204 ORTHO05D002875 1.5e-13 79.7 100 44.0
TWI56G0036 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 1.5e-13 79.7 105 43.8
CSS0012958 Camellia sinensis var. sinensis HOM05D002204 ORTHO05D002875 3.4e-13 78.6 105 41.9
HanXRQChr14g0427841 Helianthus annuus HOM05D002204 ORTHO05D002875 4.4e-13 78.2 103 40.8
SalBow5G0659 Salvia bowleyana HOM05D002204 ORTHO05D002875 4.4e-13 78.2 108 40.7
MSTRG.3635 Avicennia marina HOM05D002204 ORTHO05D002875 5.8e-13 77.8 100 44.0
Hma1.2p1_0085F.1_g044540 Hydrangea macrophylla HOM05D002204 ORTHO05D002875 7.5e-13 77.4 104 45.2
ECA238G1625 Erigeron canadensis HOM05D002204 ORTHO05D002875 9.8e-13 77.0 103 39.8
MSTRG.24917 Avicennia marina HOM05D002204 ORTHO05D002875 1.7e-12 76.3 102 36.3
MD06G1007000 Malus domestica HOM05D002204 ORTHO05D002875 1.7e-12 76.3 97 42.3
Actinidia15511 Actinidia chinensis HOM05D002204 ORTHO05D002875 2.2e-12 75.9 101 39.6
DCAR_016789 Daucus carota HOM05D002204 ORTHO05D002875 2.9e-12 75.5 102 44.1
Lsat_1_v5_gn_2_660 Lactuca sativa HOM05D002204 ORTHO05D002875 3.7e-12 75.1 103 40.8
Manes.01G156400 Manihot esculenta HOM05D002204 ORTHO05D002875 3.7e-12 75.1 106 41.5
Peaxi162Scf00040g03134 Petunia axillaris HOM05D002204 ORTHO05D002875 6.4e-12 74.3 104 41.3
Migut.C00370 Erythranthe guttata HOM05D002204 ORTHO05D002875 1.1e-11 73.6 106 38.7
Migut.L00780 Erythranthe guttata HOM05D002204 ORTHO05D002875 1.4e-11 73.2 105 39.0
unitig_46.g18026 Utricularia gibba HOM05D002204 ORTHO05D002875 1.9e-11 72.8 102 37.3
Nitab4.5_0008540g0010 Nicotiana tabacum HOM05D002204 ORTHO05D002875 2.4e-11 72.4 102 40.2
Ciclev10027213m.g Citrus clementina HOM05D002204 ORTHO05D002875 3.2e-11 72.0 105 38.1
Nitab4.5_0001467g0130 Nicotiana tabacum HOM05D002204 ORTHO05D002875 3.2e-11 72.0 103 42.7
Rhsim06G0004700 Rhododendron simsii HOM05D002204 ORTHO05D002875 3.2e-11 72.0 108 38.0
SGA_v2.0_scaffold133G34586 Striga asiatica HOM05D002204 ORTHO05D002875 5.4e-11 71.2 104 37.5
MSTRG.995 Avicennia marina HOM05D002204 ORTHO05D002875 7.0e-11 70.9 102 33.3
Potri.007G059000 Populus trichocarpa HOM05D002204 ORTHO05D002875 9.2e-11 70.5 104 38.5
Dinv40200 Davidia involucrata HOM05D002204 ORTHO05D002875 1.2e-10 70.1 105 40.0
ECA246G1616 Erigeron canadensis HOM05D002204 ORTHO05D000001 1.2e-10 70.1 100 38.0
CSS0010208 Camellia sinensis var. sinensis HOM05D002204 ORTHO05D002875 1.6e-10 69.7 102 42.2
CAN.G1238.25 Capsicum annuum HOM05D002204 ORTHO05D002875 1.6e-10 69.7 100 39.0
THA.LOC104813183 Tarenaya hassleriana HOM05D002204 ORTHO05D002875 1.6e-10 69.7 98 39.8
TWI09G0074 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 1.6e-10 69.7 105 40.0
Dinv28312 Davidia involucrata HOM05D002204 ORTHO05D002875 2.0e-10 69.3 100 40.0
Cpa.g.sc6.359 Carica papaya HOM05D002204 ORTHO05D002875 2.7e-10 68.9 102 33.3
Cc10_g00420 Coffea canephora HOM05D002204 ORTHO05D002875 2.7e-10 68.9 102 37.3
Solyc02g082470.4 Solanum lycopersicum HOM05D002204 ORTHO05D002875 2.7e-10 68.9 101 39.6
Sopen02g027160 Solanum pennellii HOM05D002204 ORTHO05D002875 2.7e-10 68.9 101 39.6
QL06p053171 Quercus lobata HOM05D002204 ORTHO05D002875 4.6e-10 68.2 99 38.4
Nitab4.5_0009646g0050 Nicotiana tabacum HOM05D002204 ORTHO05D002875 6.0e-10 67.8 102 37.3
PGSC0003DMG400001509 Solanum tuberosum HOM05D002204 ORTHO05D002875 6.0e-10 67.8 100 40.0
COL.COLO4_22561 Corchorus olitorius HOM05D002204 ORTHO05D002875 2.3e-09 65.9 102 34.3
Lj2C501T12 Lonicera japonica HOM05D002204 ORTHO05D002875 2.3e-09 65.9 106 37.7
Solyc04g082620.3 Solanum lycopersicum HOM05D002204 ORTHO05D002875 2.3e-09 65.9 102 37.3
Sopen04g036250 Solanum pennellii HOM05D002204 ORTHO05D002875 2.3e-09 65.9 102 37.3
AT5G24360 Arabidopsis thaliana HOM05D002204 ORTHO05D002875 3.0e-09 65.5 98 37.8
CARHR189060 Cardamine hirsuta HOM05D002204 ORTHO05D002875 3.0e-09 65.5 98 36.7
Haze_03628 Corylus avellana HOM05D000109 ORTHO05D002875 3.0e-09 65.5 100 38.0
PGSC0003DMG400009991 Solanum tuberosum HOM05D002204 ORTHO05D002875 3.9e-09 65.1 102 37.3
CiPaw.07G001200 Carya illinoinensis HOM05D002204 ORTHO05D002875 5.0e-09 64.7 99 36.4
HanXRQChr16g0531931 Helianthus annuus HOM05D002204 ORTHO05D002875 5.0e-09 64.7 103 35.9
Atru.chr3.25 Acer truncatum HOM05D002204 ORTHO05D015753 6.6e-09 64.3 109 37.6
AL6G35920 Arabidopsis lyrata HOM05D002204 ORTHO05D002875 6.6e-09 64.3 98 36.7
Carub.0006s2220 Capsella rubella HOM05D002204 ORTHO05D002875 8.6e-09 63.9 98 36.7
Thhalv10003683m.g Eutrema salsugineum HOM05D002204 ORTHO05D002875 2.5e-08 62.4 98 36.7
CAN.G311.140 Capsicum annuum HOM05D002204 ORTHO05D002875 4.3e-08 61.6 102 35.3
Duzib147G1495 Durio zibethinus HOM05D002204 ORTHO05D002875 4.3e-08 61.6 102 33.3
AUR62035151 Chenopodium quinoa HOM05D002204 ORTHO05D002875 7.3e-08 60.8 105 36.2
Ca_24990_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 7.3e-08 60.8 104 36.5
AUR62042588 Chenopodium quinoa HOM05D002204 ORTHO05D002875 9.5e-08 60.5 100 38.0
Eucgr.J02541 Eucalyptus grandis HOM05D002204 ORTHO05D002875 9.5e-08 60.5 101 38.6
arahy.Tifrunner.gnm1.ann1.770S43 Arachis hypogaea HOM05D002204 ORTHO05D002875 1.2e-07 60.1 107 33.6
arahy.Tifrunner.gnm1.ann1.9UP1GZ Arachis hypogaea HOM05D002204 ORTHO05D002875 1.2e-07 60.1 107 33.6
EL10Ac1g01902 Beta vulgaris HOM05D002204 ORTHO05D002875 1.2e-07 60.1 105 36.2
CDE02G2925 Ceratophyllum demersum HOM05D002204 ORTHO05D002875 1.2e-07 60.1 99 34.3
Sed0026219 Sechium edule HOM05D002467 ORTHO05D002875 1.2e-07 60.1 105 29.5
Thecc.01G003700 Theobroma cacao HOM05D002204 ORTHO05D002875 1.2e-07 60.1 102 30.4
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.6e-07 59.7 100 34.0
Gohir.D03G000900 Gossypium hirsutum HOM05D002204 ORTHO05D002875 1.6e-07 59.7 105 28.6
Gorai.003G001300 Gossypium raimondii HOM05D002204 ORTHO05D002875 1.6e-07 59.7 105 28.6
Hund01790 Selenicereus undatus HOM05D002204 ORTHO05D002875 1.6e-07 59.7 100 38.0
Sc02g0009200 Simmondsia chinensis HOM05D002204 ORTHO05D002875 4.7e-07 58.2 100 39.0
unitig_32.g11841 Utricularia gibba HOM05D002204 ORTHO05D002875 4.7e-07 58.2 101 33.7
Medtr5g024510 Medicago truncatula HOM05D002204 ORTHO05D002875 6.2e-07 57.8 106 34.9
ClCG01G015810 Citrullus lanatus HOM05D002204 ORTHO05D002875 8.0e-07 57.4 104 31.7
Peaxi162Scf00680g00118 Petunia axillaris HOM05D002204 ORTHO05D002875 8.0e-07 57.4 99 33.3
TPR.G33891 Trifolium pratense HOM05D002204 ORTHO05D002875 8.0e-07 57.4 104 32.7
Ah.11g041810 Amaranthus hybridus HOM05D002204 ORTHO05D002875 1.1e-06 57.0 105 35.2
arahy.Tifrunner.gnm1.ann1.DF5JNQ Arachis hypogaea HOM05D002204 ORTHO05D002875 1.4e-06 56.6 103 30.1
CDE04G3410 Ceratophyllum demersum HOM05D002204 ORTHO05D002875 1.4e-06 56.6 99 34.3
arahy.Tifrunner.gnm1.ann1.QAQH8E Arachis hypogaea HOM05D002204 ORTHO05D002875 1.8e-06 56.2 103 29.1
RcHm_v2.0_Chr2g0096971 Rosa chinensis HOM05D002204 ORTHO05D002875 3.1e-06 55.5 103 33.0
Aa31LG8G14810 Aethionema arabicum HOM05D002204 ORTHO05D002875 4.0e-06 55.1 99 32.3
MELO3C008016.2 Cucumis melo HOM05D002204 ORTHO05D002875 4.0e-06 55.1 101 33.7
FAN04G0648 Fragaria x ananassa HOM05D002204 ORTHO05D002875 4.0e-06 55.1 100 34.0
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 6.8e-06 54.3 102 35.3
Ca_02845_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 8.9e-06 53.9 100 32.0
FvH4_5g25750 Fragaria vesca HOM05D002204 ORTHO05D002875 8.9e-06 53.9 102 36.3
Sp2g22960 Schrenkiella parvula HOM05D002204 ORTHO05D002875 8.9e-06 53.9 100 35.0


User provided reference genes

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