Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.0e-231 806.6 468 100.0
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.3e-210 736.5 472 92.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 2.5e-174 615.9 486 71.0
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.8e-173 612.5 474 73.6
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.6e-160 570.1 472 70.8
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.1e-160 569.7 466 67.2
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 4.3e-158 562.0 481 71.9
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.3e-157 560.5 481 72.1
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 9.0e-156 554.3 476 65.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 2.0e-155 553.1 487 64.1
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.8e-154 548.9 473 69.8
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.8e-154 548.9 468 67.7
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 8.4e-154 547.7 490 64.5
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.1e-153 547.4 468 67.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.4e-153 547.0 471 66.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.2e-153 545.4 465 65.4
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 9.3e-153 544.3 469 65.7
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.6e-152 543.5 465 63.7
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.6e-152 542.0 471 67.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.3e-150 535.4 492 67.9
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 3.7e-149 532.3 481 70.9
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.4e-148 530.4 473 61.3
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.4e-148 530.4 484 69.2
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.2e-147 527.3 486 60.7
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.6e-147 526.2 501 61.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 5.8e-147 525.0 486 59.9
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.6e-147 524.6 472 60.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.0e-146 524.2 481 67.8
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.8e-146 522.3 483 69.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.1e-145 520.8 474 62.2
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 5.5e-145 518.5 471 64.1
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.1e-145 518.1 477 65.8
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.2e-144 517.3 472 65.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.2e-144 517.3 484 61.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.6e-144 516.9 474 63.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.7e-144 516.2 471 60.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 6.1e-144 515.0 476 66.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 6.1e-144 515.0 478 61.7
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 7.9e-144 514.6 486 60.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.8e-143 513.5 474 59.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.3e-143 513.1 472 66.5
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.3e-143 513.1 465 66.2
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.9e-143 512.3 465 68.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.9e-143 512.3 480 68.5
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 6.7e-143 511.5 477 64.8
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.1e-142 510.8 473 66.6
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-142 510.8 472 66.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-142 510.4 491 60.3
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.5e-142 509.6 465 66.7
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 2.5e-142 509.6 450 61.1
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 2.5e-142 509.6 483 60.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 3.3e-142 509.2 471 68.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 3.3e-142 509.2 423 64.5
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.3e-142 509.2 481 59.5
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 4.3e-142 508.8 474 58.9
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 5.7e-142 508.4 391 67.3
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.2e-141 506.5 470 61.1
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 3.7e-141 505.8 484 59.9
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.7e-141 505.8 479 61.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.8e-141 505.4 490 61.2
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.3e-141 505.0 488 63.3
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.2e-141 504.6 479 60.1
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.4e-140 503.8 473 65.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.1e-140 502.3 485 63.5
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 4.1e-140 502.3 504 58.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 5.3e-140 501.9 462 58.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 5.3e-140 501.9 467 60.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 5.3e-140 501.9 465 59.8
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-139 500.4 488 59.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-139 500.4 478 57.9
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.0e-139 500.0 387 75.2
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.0e-138 497.7 494 58.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.0e-138 497.7 479 64.3
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.3e-138 497.3 474 64.3
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.7e-138 496.9 485 60.2
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.2e-138 496.5 490 59.4
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 2.2e-138 496.5 394 73.4
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.9e-138 496.1 481 63.6
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 5.0e-138 495.4 492 65.7
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.4e-137 493.8 482 58.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-137 493.8 473 64.9
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-137 493.4 480 61.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.9e-137 493.4 452 65.0
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-137 493.0 471 63.7
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.2e-137 492.3 485 59.2
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 9.4e-137 491.1 462 58.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.6e-136 490.3 467 64.2
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.6e-136 490.3 485 56.1
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.6e-136 488.8 490 56.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 6.1e-136 488.4 474 58.4
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.9e-136 488.0 473 57.1
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 7.9e-136 488.0 462 58.0
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.4e-135 487.3 384 66.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 6.7e-135 485.0 466 60.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 6.7e-135 485.0 464 60.3
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 6.7e-135 485.0 478 58.6
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 8.8e-135 484.6 485 57.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.5e-134 483.8 472 56.6
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-134 483.8 480 62.5
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.5e-134 483.8 474 60.8
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.5e-134 483.8 466 60.3
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.0e-134 483.4 473 63.6
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-134 483.0 480 62.3
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.5e-134 483.0 513 55.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 3.3e-134 482.6 473 60.0
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 7.4e-134 481.5 488 55.1
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 9.7e-134 481.1 474 60.1
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.8e-133 479.6 494 61.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.7e-133 479.2 475 62.7
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.4e-132 476.5 469 62.9
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.1e-132 476.1 481 59.0
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 3.1e-132 476.1 480 65.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 4.1e-132 475.7 476 61.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 5.3e-132 475.3 503 55.3
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 9.1e-132 474.6 473 60.7
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.6e-131 473.0 474 59.9
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.4e-131 472.6 453 63.1
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 4.5e-131 472.2 492 61.8
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 5.9e-131 471.9 481 58.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.0e-130 471.1 467 63.2
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.0e-130 471.1 480 58.1
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.3e-130 470.7 483 61.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.7e-130 470.3 474 55.7
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 6.5e-130 468.4 469 62.3
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 8.5e-130 468.0 469 61.8
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.2e-129 466.1 403 63.8
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 9.4e-129 464.5 455 60.2
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.6e-128 462.6 467 63.2
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.5e-126 457.2 479 53.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 3.3e-126 456.1 485 55.3
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.4e-126 455.7 458 56.3
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.2e-125 453.4 414 61.8
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.2e-125 451.4 388 64.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 8.2e-125 451.4 487 51.5
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 3.8e-122 442.6 439 60.4
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 8.5e-122 441.4 480 54.2
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 6.7e-119 431.8 475 53.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.4e-118 429.1 386 67.1
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 7.4e-118 428.3 463 55.5
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.2e-117 426.8 388 59.8
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-116 423.7 318 67.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 5.3e-116 422.2 479 51.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 8.5e-114 414.8 407 59.5
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 3.4e-110 402.9 447 50.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.3e-109 398.3 270 73.0
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.4e-100 370.9 470 46.4
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 7.2e-97 358.6 381 51.7
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.5e-94 350.9 458 55.5
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 9.2e-84 315.1 469 43.3
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.0e-82 310.1 341 51.3
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 8.6e-82 308.5 468 40.0
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 6.4e-61 239.2 341 42.5
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 7.1e-60 235.7 195 81.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.8e-55 221.1 192 64.1
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 4.4e-54 216.5 258 48.4
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 5.8e-46 189.5 362 34.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-44 184.5 322 41.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 5.3e-39 166.4 118 66.9
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 7.9e-35 152.5 278 36.0
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.0e-34 150.6 137 68.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.6e-33 145.6 199 44.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 5.3e-31 139.8 100 65.0
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.0e-29 135.6 129 66.7
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 9.3e-28 129.0 129 62.8
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.3e-25 120.6 145 46.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.3e-24 118.6 100 60.0
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 5.3e-23 113.2 145 48.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 5.3e-23 113.2 171 40.9
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 5.3e-23 113.2 171 40.9
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.2e-22 112.1 273 29.3
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.1e-18 96.7 304 31.6
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 2.2e-16 91.3 71 56.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.1e-11 74.7 59 64.4
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 1.2e-06 58.9 47 63.8
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 2.0e-06 58.2 134 44.0


User provided reference genes

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