Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 6.9e-113 411.0 262 100.0
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.0e-84 315.8 182 95.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 8.2e-74 281.2 247 75.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.5e-72 275.4 182 81.3
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.4e-67 259.2 181 76.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.3e-66 257.3 255 68.6
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.4e-65 253.1 252 56.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 4.2e-62 242.3 252 54.4
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.2e-61 240.7 183 69.4
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 2.1e-61 240.0 183 70.5
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 8.0e-61 238.0 171 75.4
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 8.8e-60 234.6 184 68.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-59 234.2 183 68.9
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.0e-59 233.4 184 70.7
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.3e-58 230.7 180 67.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.4e-57 227.3 184 66.3
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.8e-57 226.9 184 66.3
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.4e-57 226.5 184 66.3
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 7.7e-56 221.5 182 65.4
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.9e-55 219.5 177 67.2
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 3.8e-55 219.2 183 63.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.0e-55 218.8 182 69.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 6.6e-55 218.4 171 66.1
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-54 217.2 172 65.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.5e-54 217.2 185 65.9
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.6e-53 213.8 186 64.0
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.6e-53 213.8 179 67.0
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 4.7e-53 212.2 178 63.5
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 8.0e-53 211.5 182 62.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 8.0e-53 211.5 182 61.5
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 3.0e-52 209.5 179 65.4
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 6.8e-52 208.4 178 63.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 8.9e-52 208.0 170 62.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 8.9e-52 208.0 186 61.8
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.2e-51 207.6 183 63.4
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.6e-51 206.5 182 66.5
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.3e-50 204.1 183 60.7
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.3e-50 204.1 183 60.7
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.3e-50 204.1 183 60.7
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 3.7e-50 202.6 182 66.5
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.1e-49 201.1 255 50.2
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 3.2e-49 199.5 185 62.2
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 5.4e-49 198.7 179 66.5
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.5e-48 196.1 182 63.2
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.5e-48 196.1 182 63.2
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 7.8e-48 194.9 177 62.7
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.7e-47 193.7 177 57.1
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.7e-47 193.7 169 60.4
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.7e-47 193.7 183 57.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 2.3e-47 193.4 174 62.6
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 3.9e-47 192.6 246 46.3
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 6.6e-47 191.8 184 59.8
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.6e-47 191.8 166 68.7
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 8.6e-47 191.4 181 57.5
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.5e-46 190.7 166 59.6
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.9e-46 190.3 182 58.8
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 3.3e-46 189.5 185 58.9
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 4.3e-46 189.1 185 58.9
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 4.3e-46 189.1 182 55.5
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 5.6e-46 188.7 185 59.5
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 9.5e-46 188.0 172 57.0
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.6e-45 187.2 178 61.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 3.6e-45 186.0 166 60.2
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.0e-45 184.9 171 57.9
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.0e-44 184.5 194 58.2
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.4e-44 184.1 172 62.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.8e-44 181.8 148 62.8
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 6.8e-44 181.8 174 57.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 8.9e-44 181.4 180 61.7
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 3.4e-43 179.5 192 61.5
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 3.4e-43 179.5 192 61.5
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.7e-42 177.2 192 60.9
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.7e-42 177.2 192 60.9
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 4.9e-42 175.6 188 53.7
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 8.3e-42 174.9 176 59.7
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.1e-41 174.5 182 59.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.9e-41 173.7 181 55.8
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.5e-40 169.5 191 58.6
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.3e-39 167.5 151 55.0
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 3.9e-39 166.0 160 55.6
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.1e-38 164.5 161 56.5
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.9e-38 163.7 182 56.0
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 4.3e-38 162.5 182 56.6
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.6e-37 160.6 182 53.3
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 4.7e-37 159.1 191 55.0
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 4.7e-37 159.1 169 58.0
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.4e-35 152.5 171 52.6
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 9.8e-35 151.4 178 52.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.3e-34 151.0 172 55.2
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.3e-34 148.3 185 55.7
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.4e-33 147.5 176 50.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.9e-33 147.1 159 56.0
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.4e-33 146.7 174 51.1
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 4.1e-33 146.0 222 50.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 9.2e-33 144.8 222 52.3
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 6.0e-32 142.1 163 52.1
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.7e-31 140.6 172 52.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 8.6e-31 138.3 149 56.4
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.9e-30 137.1 174 50.6
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.5e-30 136.7 191 53.4
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 4.3e-30 136.0 190 44.7
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.1e-28 131.3 179 47.5
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.8e-28 130.6 258 37.6
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 4.0e-28 129.4 158 50.0
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.5e-27 127.5 179 46.4
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.0e-27 127.1 186 49.5
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 6.4e-26 122.1 166 44.0
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-25 120.9 133 51.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 9.2e-25 118.2 187 45.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.5e-24 116.3 86 62.8
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 5.1e-23 112.5 166 41.0
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 8.6e-23 111.7 168 42.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.5e-22 110.9 146 45.2
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-21 107.8 172 45.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.8e-20 104.0 96 57.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.2e-18 97.1 93 58.1
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.1e-14 84.7 60 63.3
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.5e-14 84.3 177 35.6
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.5e-14 84.3 183 39.3
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.1e-13 80.5 153 36.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 3.1e-12 76.6 120 39.2
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 6.9e-12 75.5 170 37.1
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 7.6e-11 72.0 120 37.5
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.0e-07 61.6 39 64.1
arahy.Tifrunner.gnm1.ann1.MYP07C Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-07 60.5 28 89.3
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 3.9e-07 59.7 46 56.5
SGA_v2.0_scaffold338G49234 Striga asiatica HOM05D005383 ORTHO05D006722 5.6e-06 55.8 29 79.3


User provided reference genes

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