Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 8.3e-180 633.6 334 100.0
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.9e-137 491.9 335 82.4
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.5e-133 479.9 341 80.1
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.7e-129 464.5 335 78.5
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.9e-128 463.0 334 75.4
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.5e-128 462.6 334 77.2
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 5.7e-128 461.5 340 77.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 5.7e-128 461.5 334 76.6
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.3e-127 460.3 334 76.3
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 3.7e-127 458.8 345 75.4
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 4.8e-127 458.4 338 77.8
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.8e-127 458.4 335 77.9
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.8e-126 456.4 334 72.5
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.4e-126 456.1 335 77.3
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 6.9e-126 454.5 336 77.1
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-126 454.5 334 73.4
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 6.9e-126 454.5 334 73.4
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 9.0e-126 454.1 313 77.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.2e-125 453.8 345 70.7
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.5e-125 453.4 334 73.7
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.5e-125 453.4 338 76.6
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.0e-125 453.0 334 75.7
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 4.5e-125 451.8 313 76.4
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 5.9e-125 451.4 313 76.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.9e-125 451.4 336 74.7
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.9e-125 451.4 347 75.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 7.7e-125 451.1 313 75.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.7e-125 451.1 334 73.4
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-124 450.7 334 74.0
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.3e-124 450.3 313 75.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 2.2e-124 449.5 334 76.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.8e-124 448.7 336 74.7
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 3.8e-124 448.7 335 76.4
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 3.8e-124 448.7 341 76.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 6.5e-124 448.0 334 72.2
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 6.5e-124 448.0 334 75.1
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.2e-123 445.7 312 76.0
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.2e-123 445.7 338 75.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 2.1e-122 443.0 336 76.8
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.6e-122 442.2 334 71.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 6.1e-122 441.4 344 73.0
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 6.1e-122 441.4 334 74.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.1e-122 441.4 339 74.3
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.1e-122 441.4 334 71.6
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.4e-121 440.3 344 72.7
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.4e-121 440.3 334 72.5
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.8e-121 439.9 337 75.1
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.8e-121 439.9 334 71.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.5e-120 436.0 338 74.0
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.7e-120 434.9 334 70.7
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.8e-119 432.6 327 74.0
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 3.7e-119 432.2 313 73.8
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 3.7e-119 432.2 313 73.8
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 6.3e-119 431.4 334 71.9
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-118 430.3 340 72.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.8e-118 429.9 334 73.1
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 3.1e-118 429.1 313 71.9
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 9.1e-118 427.6 334 69.2
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 9.1e-118 427.6 334 68.9
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.6e-117 426.0 344 70.6
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.6e-117 426.0 320 71.6
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.4e-117 425.6 333 69.1
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 4.5e-117 425.2 346 69.9
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 5.9e-117 424.9 327 69.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 5.9e-117 424.9 314 71.7
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 7.7e-117 424.5 335 68.4
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-116 423.7 331 68.0
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.2e-116 422.9 334 71.6
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.9e-116 422.5 334 72.8
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 6.5e-116 421.4 334 67.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 6.5e-116 421.4 313 70.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.5e-116 421.0 314 71.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-115 420.6 331 67.7
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.4e-115 420.2 334 68.0
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-115 420.2 315 71.1
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-115 420.2 315 71.4
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.2e-115 419.1 337 69.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.2e-114 417.2 334 68.3
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.7e-114 416.0 334 70.1
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 4.7e-114 415.2 334 70.1
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 4.7e-114 415.2 334 70.1
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.8e-113 413.3 334 70.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.8e-113 413.3 313 69.6
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.5e-112 410.2 335 66.6
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.0e-112 409.8 321 69.8
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 9.7e-112 407.5 313 69.6
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.7e-111 406.8 334 71.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.7e-111 406.8 334 71.3
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.7e-111 406.8 357 64.1
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.2e-111 406.4 352 64.8
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 6.3e-111 404.8 313 67.7
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 6.3e-111 404.8 321 69.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 8.2e-111 404.4 360 66.9
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.4e-110 402.9 335 63.9
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.3e-110 401.7 334 67.7
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.6e-109 399.4 335 64.8
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.5e-109 399.1 334 67.7
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 8.5e-108 394.4 304 69.7
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.9e-107 393.3 343 65.0
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.2e-107 391.3 349 62.8
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-105 387.5 304 63.8
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.3e-105 386.3 313 68.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-104 384.0 334 61.1
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 3.3e-104 382.5 316 64.9
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 4.4e-104 382.1 316 64.9
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 7.5e-104 381.3 316 64.6
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.6e-98 362.5 273 72.2
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.0e-97 359.0 262 73.7
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.1e-94 350.9 297 69.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-94 350.5 313 62.0
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.1e-94 349.0 304 60.2
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-89 333.6 336 58.6
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.8e-89 333.6 334 60.8
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.8e-89 333.6 334 60.2
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.5e-88 328.2 197 84.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.8e-86 323.6 295 59.7
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 4.3e-83 312.4 182 89.0
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.9e-79 299.7 191 80.1
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.9e-79 299.7 279 57.0
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.1e-78 297.7 325 52.3
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-78 297.0 272 64.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.0e-77 293.5 315 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.0e-76 291.2 318 52.8
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.5e-75 287.3 307 54.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.5e-75 284.6 286 55.6
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 6.2e-74 282.0 331 51.4
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.2e-73 278.9 196 68.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.2e-73 278.9 182 78.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-72 277.7 237 65.4
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 4.7e-66 255.8 304 48.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.2e-65 252.3 246 61.8
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.3e-63 247.7 191 68.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 7.1e-62 241.9 148 86.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 9.5e-59 231.5 116 100.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 4.4e-48 196.1 111 99.1
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 8.4e-39 165.2 158 65.2
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.8e-36 157.5 156 58.3
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.8e-36 157.5 156 60.3
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 8.7e-36 155.2 94 80.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.5e-35 153.7 164 53.0
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-34 151.0 318 35.5
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.0e-32 144.1 102 84.3
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 4.9e-31 139.4 155 51.6
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-29 133.3 143 51.7
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 5.1e-28 129.4 112 64.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 5.1e-28 129.4 112 64.3
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 6.7e-28 129.0 112 64.3
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.1e-27 128.3 106 67.0
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.1e-27 128.3 112 63.4
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.1e-27 128.3 112 63.4
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.9e-27 127.5 112 63.4
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 3.3e-27 126.7 102 65.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.3e-26 124.8 66 89.4
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.1e-26 124.0 112 62.5
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 3.7e-26 123.2 305 28.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.4e-25 121.3 112 61.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.3e-23 114.8 279 33.7
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.5e-22 109.4 291 30.9
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.2e-21 108.2 88 64.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.6e-21 107.8 156 41.7
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.3e-20 104.8 156 41.7
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.3e-20 104.0 291 28.5
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 5.7e-19 99.4 84 64.3
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.0e-17 92.0 66 74.2
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.0e-12 78.6 43 86.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 4.3e-11 73.2 49 67.3


User provided reference genes

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