Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 2.2e-102 375.6 180 100.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 3.9e-59 231.9 116 100.0
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.2e-53 212.2 116 90.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.6e-50 202.6 116 88.8
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.6e-50 202.6 115 87.8
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.3e-50 202.2 116 87.9
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 4.4e-50 201.8 116 87.9
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.7e-50 201.4 116 87.9
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 9.7e-50 200.7 116 87.1
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 9.7e-50 200.7 116 87.1
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.7e-49 199.9 116 86.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.7e-49 199.9 116 87.9
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 2.8e-49 199.1 116 87.1
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 3.7e-49 198.7 116 86.2
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 3.7e-49 198.7 116 86.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 3.7e-49 198.7 116 87.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.8e-49 198.4 116 86.2
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.8e-49 198.4 116 86.2
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 4.8e-49 198.4 116 87.1
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.3e-49 198.0 116 85.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 6.3e-49 198.0 116 87.1
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 6.3e-49 198.0 116 85.3
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 8.2e-49 197.6 116 86.2
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 8.2e-49 197.6 116 87.1
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.1e-48 197.2 116 86.2
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.4e-48 196.8 116 86.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-48 196.8 116 85.3
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.4e-48 196.8 116 86.2
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.4e-48 196.1 116 84.5
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.4e-48 196.1 116 85.3
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 3.1e-48 195.7 116 84.5
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 4.1e-48 195.3 116 86.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.1e-48 195.3 116 84.5
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 5.3e-48 194.9 116 83.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 5.3e-48 194.9 116 83.6
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 5.3e-48 194.9 116 84.5
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 7.0e-48 194.5 116 82.8
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 9.1e-48 194.1 116 85.3
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-47 193.7 116 83.6
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.2e-47 193.7 116 85.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.2e-47 193.7 116 85.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.2e-47 193.7 116 82.8
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.6e-47 193.4 116 85.3
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.6e-47 193.4 116 85.3
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.6e-47 193.4 116 84.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.0e-47 193.0 116 83.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.0e-47 193.0 116 83.6
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.0e-47 193.0 116 87.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.0e-47 193.0 116 87.1
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.6e-47 192.6 116 81.0
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.5e-47 192.2 115 84.3
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.5e-47 191.8 116 82.8
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 5.9e-47 191.4 116 84.5
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 5.9e-47 191.4 111 86.5
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.3e-46 190.3 116 84.5
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.3e-46 190.3 116 81.9
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.3e-46 190.3 116 83.6
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.3e-46 190.3 116 83.6
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.2e-46 189.5 116 83.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 6.5e-46 188.0 116 81.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.5e-46 188.0 115 80.0
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 8.5e-46 187.6 116 80.2
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.5e-45 186.0 116 80.2
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.2e-45 185.3 116 79.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 7.2e-45 184.5 116 77.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 7.2e-45 184.5 116 78.4
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 9.4e-45 184.1 116 79.3
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 9.4e-45 184.1 115 79.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 9.4e-45 184.1 117 81.2
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 9.4e-45 184.1 117 81.2
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.2e-44 183.7 116 80.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.2e-44 183.7 116 78.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.2e-44 183.7 116 78.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.6e-44 183.3 115 78.3
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.6e-44 183.3 117 76.1
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 4.7e-44 181.8 116 77.6
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 4.7e-44 181.8 113 78.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 8.0e-44 181.0 116 76.7
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 8.0e-44 181.0 114 78.1
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-43 180.6 116 75.9
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.0e-43 180.6 116 75.9
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.0e-43 180.6 116 76.7
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.0e-43 180.6 116 78.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.4e-43 180.3 116 76.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.4e-43 180.3 116 76.7
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-43 179.5 116 77.6
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 3.0e-43 179.1 116 80.2
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 3.0e-43 179.1 116 80.2
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 4.0e-43 178.7 116 74.1
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 4.0e-43 178.7 113 77.0
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.0e-43 178.7 116 77.6
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 5.2e-43 178.3 115 79.1
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.2e-43 178.3 116 75.0
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.2e-42 177.2 116 75.0
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.2e-42 177.2 114 79.8
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.2e-42 177.2 116 75.9
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.5e-42 176.8 116 78.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 1.5e-42 176.8 116 75.9
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.0e-42 176.4 116 78.4
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 2.0e-42 176.4 116 78.4
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.0e-42 176.4 116 78.4
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.6e-42 176.0 116 75.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.4e-42 175.3 116 75.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.4e-42 175.3 117 76.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 5.7e-42 174.9 117 76.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 7.5e-42 174.5 114 77.2
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 9.7e-42 174.1 117 76.1
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.3e-41 173.7 122 77.0
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-41 173.7 116 79.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 2.2e-41 172.9 132 75.8
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 6.3e-41 171.4 122 76.2
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-40 170.2 116 72.4
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.2e-39 167.2 117 71.8
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 4.5e-39 165.2 116 73.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.5e-37 159.5 125 71.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.2e-37 158.7 116 69.8
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.2e-37 158.7 115 66.1
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.2e-37 157.9 107 70.1
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.7e-36 155.2 94 80.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.4e-35 153.7 125 64.0
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 3.5e-31 139.0 86 81.4
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.8e-27 126.7 109 60.6
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 6.8e-27 124.8 66 89.4
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 6.6e-22 108.2 76 75.0
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.7e-20 102.1 66 78.8
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 4.7e-20 102.1 106 54.7
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 6.1e-20 101.7 67 77.6
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-19 100.1 82 62.2
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.0e-19 99.0 79 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.8e-19 98.2 116 48.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 6.8e-19 98.2 85 60.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.2e-18 97.4 79 60.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 2.9e-17 92.8 79 55.7
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-16 88.2 96 55.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.5e-15 85.9 87 49.4
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 6.2e-12 75.1 65 63.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 6.2e-12 75.1 65 63.1
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 6.2e-12 75.1 65 63.1
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 8.0e-12 74.7 133 36.8
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.4e-11 73.9 65 63.1
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.4e-11 73.9 65 63.1
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.3e-11 73.2 65 63.1
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 6.8e-11 71.6 133 36.8
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 6.8e-11 71.6 65 61.5
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 8.9e-11 71.2 65 61.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 8.9e-11 71.2 65 61.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 8.9e-11 71.2 65 61.5
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.4e-10 69.3 64 60.9
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.5e-10 68.2 76 46.1
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 9.2e-08 61.2 60 48.3
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.0e-07 60.1 54 57.4
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 5.0e-06 55.5 61 41.0


User provided reference genes

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