Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 0.0e+00 1582.8 811 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 1.2e-216 757.3 809 49.9
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.4e-209 733.8 810 48.0
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 3.1e-196 689.5 822 45.4
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 5.9e-195 685.3 824 45.8
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 7.7e-195 684.9 826 44.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 1.2e-192 677.6 832 45.0
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 3.9e-191 672.5 833 43.5
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 3.9e-191 672.5 834 44.4
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 1.1e-190 671.0 826 44.9
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 2.5e-190 669.8 825 43.5
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 4.3e-190 669.1 821 44.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 5.7e-190 668.7 824 44.4
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 2.2e-189 666.8 830 45.5
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 3.7e-189 666.0 819 44.4
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.8e-188 663.7 830 45.2
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 3.1e-188 662.9 837 42.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 4.1e-188 662.5 834 43.4
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 6.9e-188 661.8 830 45.2
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 9.1e-188 661.4 824 43.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-187 661.0 822 44.2
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 1.5e-187 660.6 828 43.0
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 2.0e-187 660.2 824 43.7
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 4.5e-187 659.1 822 44.0
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 1.0e-186 657.9 830 43.4
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 1.0e-186 657.9 829 43.8
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 2.2e-186 656.8 847 42.9
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 2.9e-186 656.4 825 43.6
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 2.9e-186 656.4 833 43.1
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 2.9e-186 656.4 844 42.9
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 3.8e-186 656.0 833 43.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 5.0e-186 655.6 830 42.7
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 6.5e-186 655.2 829 43.9
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 1.4e-185 654.1 814 44.2
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 3.2e-185 652.9 845 43.1
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 5.5e-185 652.1 824 43.7
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 5.5e-185 652.1 826 43.3
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 7.2e-185 651.7 819 43.6
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 1.2e-184 651.0 832 43.4
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 2.1e-184 650.2 851 43.9
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 2.7e-184 649.8 844 42.8
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 3.6e-184 649.4 810 44.7
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 4.7e-184 649.0 823 42.9
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 6.1e-184 648.7 822 43.8
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 1.0e-183 647.9 844 42.5
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 1.4e-183 647.5 846 42.7
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 1.4e-183 647.5 860 42.7
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 5.1e-183 645.6 842 42.0
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 6.7e-183 645.2 830 43.7
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 8.8e-183 644.8 847 42.3
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 1.1e-182 644.4 846 42.2
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.5e-182 644.0 818 43.4
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 1.5e-182 644.0 832 43.4
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 1.5e-182 644.0 847 42.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.7e-181 640.6 859 42.7
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 3.7e-181 639.4 833 43.7
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 3.7e-181 639.4 834 42.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 4.8e-181 639.0 848 42.1
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 4.8e-181 639.0 838 41.9
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 6.3e-181 638.6 859 42.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 6.3e-181 638.6 861 42.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.4e-180 637.5 863 42.3
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 1.4e-180 637.5 831 42.7
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 2.4e-180 636.7 856 42.1
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 5.3e-180 635.6 841 42.2
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 5.3e-180 635.6 804 43.5
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.5e-179 634.0 832 43.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 3.5e-179 632.9 860 42.3
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 4.5e-179 632.5 841 41.9
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 1.7e-178 630.6 831 42.6
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 2.2e-178 630.2 824 41.3
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 2.9e-178 629.8 805 43.0
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 6.5e-178 628.6 810 42.7
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 1.9e-177 627.1 853 41.9
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.9e-177 627.1 807 42.9
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 7.2e-177 625.2 844 42.5
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 3.0e-175 619.8 830 41.7
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 4.8e-173 612.5 823 42.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 1.1e-172 611.3 830 42.0
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 4.1e-172 609.4 808 42.2
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.6e-171 606.7 813 42.4
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 3.5e-171 606.3 819 41.1
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 7.2e-169 598.6 848 40.3
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.6e-168 597.4 815 42.2
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 2.8e-165 586.6 846 40.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.1e-164 584.7 825 41.5
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 1.1e-161 574.7 840 39.2
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 3.7e-157 559.7 766 42.3
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 3.7e-157 559.7 766 42.3
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 4.1e-156 556.2 803 40.7
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.5e-137 494.6 819 36.5
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 4.6e-131 473.0 610 43.1
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.2e-128 464.9 490 50.4
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 3.7e-125 453.4 503 48.1
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.0e-114 417.2 556 42.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 3.3e-113 413.7 626 39.9
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.3e-96 358.6 523 41.5
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.2e-94 352.1 513 41.7
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 7.6e-86 322.8 485 39.4
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 3.4e-78 297.4 557 36.4
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 9.7e-65 252.7 468 35.5
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.7e-64 251.9 415 40.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 4.4e-57 227.3 359 38.2
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.7e-53 215.3 211 48.8
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.1e-52 212.6 211 48.3
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 2.1e-51 208.4 213 53.1
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.3e-50 204.9 191 52.4
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 3.4e-49 201.1 193 49.7
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.3e-48 199.1 193 49.7
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.2e-48 198.4 191 49.7
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 3.7e-48 197.6 192 51.0
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.1e-47 194.5 205 45.9
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 4.9e-32 144.1 155 41.9
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.1e-28 132.9 164 44.5
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 2.5e-28 131.7 297 30.6
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 7.8e-22 110.2 111 50.5
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.3e-20 104.4 108 42.6
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.6e-20 104.0 107 49.5
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 6.8e-18 97.1 124 36.3
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 3.4e-17 94.7 87 44.8
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 7.5e-17 93.6 102 48.0
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.2e-16 92.0 103 40.8
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.9e-15 89.0 89 49.4
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.6e-11 75.9 69 52.2
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.8e-11 75.1 156 28.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.0e-10 71.2 51 66.7
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.9e-10 70.1 45 75.6
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.3e-08 66.2 45 68.9
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 4.1e-07 61.2 68 45.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 4.1e-07 61.2 68 45.6
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 7.1e-07 60.5 237 24.9
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 9.2e-07 60.1 235 23.4
Atru.chr1.1431 Acer truncatum HOM05D002649 ORTHO05D002838 3.5e-06 58.2 278 21.2
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.6e-06 57.8 60 46.7
Peaxi162Scf00008g03911 Petunia axillaris HOM05D000891 ORTHO05D000761 6.0e-06 57.4 229 25.3
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 7.8e-06 57.0 200 24.0


User provided reference genes

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