Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 0.0e+00 1552.0 786 100.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.4e-209 733.8 923 45.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.9e-198 696.8 927 43.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.6e-192 676.4 935 42.5
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 8.8e-172 608.2 846 41.0
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 9.8e-171 604.7 862 40.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.2e-170 603.6 862 40.0
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 2.8e-170 603.2 861 40.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.7e-170 602.8 861 40.8
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.7e-170 602.8 858 40.3
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 8.3e-170 601.7 861 39.5
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 4.1e-169 599.4 863 40.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.1e-169 598.2 834 40.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-168 597.4 840 40.4
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.5e-168 595.9 853 39.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 5.9e-168 595.5 840 40.0
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.7e-168 595.1 836 40.9
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.7e-168 595.1 859 40.2
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.0e-167 594.7 856 40.0
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.3e-167 594.3 855 39.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.7e-167 594.0 863 39.6
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.2e-167 593.6 859 40.4
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.0e-167 592.4 855 39.2
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 6.5e-167 592.0 861 39.1
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.9e-166 590.5 855 39.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.9e-166 590.5 843 40.1
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.9e-166 590.5 838 40.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.9e-166 590.5 857 40.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 3.2e-166 589.7 870 39.9
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.2e-166 589.7 843 40.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.2e-166 589.3 860 40.5
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 5.5e-166 589.0 929 39.9
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 5.5e-166 589.0 860 39.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 7.2e-166 588.6 852 39.7
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.2e-165 587.8 854 39.5
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.1e-165 587.0 861 39.6
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.1e-165 587.0 858 40.1
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-165 586.6 841 39.8
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.7e-165 585.9 860 39.7
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.7e-165 585.9 861 40.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 4.7e-165 585.9 864 38.8
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.7e-165 585.9 861 39.0
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 6.1e-165 585.5 856 39.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 8.0e-165 585.1 864 39.2
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-164 584.3 857 39.6
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.0e-164 583.2 869 39.4
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.0e-164 583.2 862 38.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 4.0e-164 582.8 847 40.1
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 4.0e-164 582.8 831 39.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 5.2e-164 582.4 856 39.1
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 8.8e-164 581.6 851 39.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 8.8e-164 581.6 860 38.8
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 8.8e-164 581.6 853 39.5
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 3.4e-163 579.7 859 38.8
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 4.4e-163 579.3 841 39.1
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.7e-163 578.9 862 39.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.3e-162 577.8 874 38.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.3e-162 577.8 860 39.2
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.7e-162 577.4 856 38.9
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.7e-162 577.4 857 38.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 2.2e-162 577.0 841 40.8
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.7e-162 576.2 871 38.3
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.9e-162 575.9 861 38.7
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 6.3e-162 575.5 859 38.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 6.3e-162 575.5 860 40.1
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 8.3e-162 575.1 836 39.6
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.4e-161 574.3 870 38.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 2.4e-161 573.5 851 38.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 7.0e-161 572.0 856 39.5
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 9.1e-161 571.6 850 38.6
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 9.1e-161 571.6 899 38.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 2.0e-160 570.5 861 38.7
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 5.9e-160 568.9 862 39.4
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 7.7e-160 568.5 835 38.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.7e-159 567.4 845 38.9
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.9e-159 566.6 863 38.9
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.9e-159 566.6 843 39.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 6.6e-159 565.5 898 38.0
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 8.6e-159 565.1 915 37.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-158 564.7 834 38.1
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.1e-158 564.7 839 39.5
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-158 563.9 835 38.4
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.3e-158 563.1 844 38.5
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.2e-158 562.8 849 38.6
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 5.6e-158 562.4 842 39.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-157 561.2 836 38.5
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.6e-157 560.8 850 38.1
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.1e-157 560.5 854 37.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.6e-157 559.7 835 38.9
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 4.7e-157 559.3 836 38.8
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 6.1e-157 558.9 849 38.5
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 8.0e-157 558.5 845 38.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 8.0e-157 558.5 849 38.5
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.0e-156 558.1 855 37.9
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-156 557.8 853 37.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.8e-156 557.4 819 38.3
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 3.0e-156 556.6 849 38.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.2e-156 555.8 849 38.4
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.8e-156 555.4 864 37.5
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.0e-155 553.9 838 39.0
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.0e-155 553.9 851 38.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 4.4e-155 552.7 822 39.2
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 7.5e-155 552.0 836 38.4
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 7.5e-155 552.0 858 38.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 9.8e-155 551.6 768 41.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.7e-154 550.8 819 38.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.7e-154 549.7 822 38.0
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.3e-154 548.5 862 37.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.1e-153 548.1 820 37.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.1e-153 546.2 819 37.9
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.1e-153 546.2 850 38.2
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-152 544.7 869 37.1
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 2.7e-152 543.5 860 37.8
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 5.9e-152 542.3 840 37.6
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.7e-151 540.8 843 39.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 6.6e-151 538.9 846 39.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.5e-150 537.0 845 38.8
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 5.6e-150 535.8 847 37.5
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 7.3e-150 535.4 850 38.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-149 533.9 862 37.2
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.8e-149 533.5 847 36.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.7e-149 532.7 849 37.8
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 8.0e-149 531.9 849 37.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.8e-148 530.8 847 36.2
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.2e-147 528.1 849 36.6
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.6e-147 526.9 877 36.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.3e-146 524.6 809 37.3
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.3e-146 524.6 855 36.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.1e-145 521.5 757 40.0
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.1e-145 521.5 798 39.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.4e-145 521.2 761 38.2
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.2e-144 518.1 816 38.1
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 3.0e-143 513.5 852 37.3
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.0e-143 512.7 758 39.3
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 8.6e-143 511.9 852 36.6
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-142 511.5 742 39.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.3e-142 509.6 745 39.7
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.2e-141 505.8 838 36.2
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 4.0e-140 503.1 788 37.7
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.0e-139 500.7 731 39.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 2.7e-136 490.3 862 35.4
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 5.1e-135 486.1 853 34.8
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.8e-133 480.3 673 42.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.9e-130 470.3 846 34.6
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.1e-129 468.4 647 40.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 7.1e-129 465.7 843 35.1
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 4.6e-128 463.0 824 36.0
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.1e-124 451.8 855 32.7
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 4.0e-108 396.7 607 39.5
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.5e-99 368.2 876 31.1
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.5e-96 357.1 726 34.0
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.9e-86 324.7 518 36.5
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.0e-83 314.7 426 42.3
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 2.9e-82 310.8 926 29.8
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.2e-81 307.4 446 39.7
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.1e-79 300.1 325 48.6
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.2e-75 288.9 422 38.4
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.3e-66 258.8 340 43.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.7e-61 240.7 316 42.1
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.1e-57 229.2 891 26.2
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.9e-49 201.8 279 41.9
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 7.7e-43 179.9 211 44.1
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 7.3e-41 173.3 780 26.0
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.0e-39 169.5 159 53.5
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 8.9e-39 166.4 226 37.2
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 2.9e-37 161.4 226 36.7
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.0e-31 141.0 364 31.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.9e-29 134.8 117 60.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.7e-29 134.4 184 43.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.1e-28 131.0 211 40.8
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 8.6e-26 123.2 153 45.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-19 102.8 102 48.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 4.6e-19 100.9 103 47.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.0e-18 99.8 213 31.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.7e-18 99.0 200 32.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.0e-18 98.2 99 42.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.5e-17 95.1 108 49.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.6e-10 70.1 98 42.9
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.5e-09 69.3 90 40.0
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.6e-08 65.9 104 38.5
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.6e-08 65.9 104 38.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.1e-08 65.5 104 38.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-07 63.2 50 58.0
Thhalv10000630m.g Eutrema salsugineum HOM05D004736 ORTHO05D006424 5.2e-07 60.8 175 28.0


User provided reference genes

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