Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 0.0e+00 1424.5 742 100.0
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.9e-251 870.9 738 62.5
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 3.7e-244 848.6 745 60.9
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.1e-243 845.5 747 61.2
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 6.9e-243 844.3 746 61.5
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 1.2e-242 843.6 752 61.2
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 2.9e-241 839.0 749 59.3
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 6.5e-241 837.8 744 61.2
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 8.4e-241 837.4 737 61.9
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.9e-240 836.3 754 60.5
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 1.9e-240 836.3 745 60.4
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.5e-240 835.9 745 60.7
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 3.2e-240 835.5 745 60.0
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.2e-240 835.1 745 60.0
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 4.2e-240 835.1 758 60.2
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 9.3e-240 833.9 747 60.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.2e-239 833.6 751 59.7
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 2.7e-239 832.4 741 59.4
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 4.6e-239 831.6 754 59.9
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 6.0e-239 831.2 747 60.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 7.9e-239 830.9 748 60.6
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 7.9e-239 830.9 837 56.3
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.0e-238 830.5 748 59.5
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.8e-238 829.7 752 59.7
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.8e-238 829.7 756 59.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.3e-238 829.3 747 59.8
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.3e-238 829.3 747 60.6
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.0e-238 828.9 750 60.0
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.1e-238 828.2 746 59.7
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 8.7e-238 827.4 751 59.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 8.7e-238 827.4 758 58.0
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.5e-237 826.6 750 58.9
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.9e-237 826.2 751 58.9
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.9e-237 826.2 758 58.3
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.3e-237 825.5 748 60.2
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 5.7e-237 824.7 749 58.2
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.6e-236 823.2 747 59.3
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.8e-236 822.4 747 59.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 3.7e-236 822.0 743 59.4
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.8e-236 821.6 748 59.0
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 8.2e-236 820.8 751 58.9
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.8e-235 819.7 750 59.3
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.4e-235 819.3 749 58.6
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 3.1e-235 818.9 751 59.7
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.1e-235 818.5 753 59.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 4.1e-235 818.5 755 59.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 4.1e-235 818.5 752 60.0
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 5.3e-235 818.1 753 60.2
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.9e-235 817.8 753 58.2
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.2e-234 817.0 751 57.3
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 5.9e-234 814.7 751 58.2
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 5.9e-234 814.7 755 56.7
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.0e-233 813.9 751 59.3
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.3e-233 813.5 793 57.3
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.7e-233 813.1 752 58.9
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.8e-233 812.0 752 57.2
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 6.5e-233 811.2 748 59.5
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 6.5e-233 811.2 742 59.0
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.4e-232 810.1 754 58.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 3.2e-232 808.9 750 58.8
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 4.2e-232 808.5 749 59.3
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 7.2e-232 807.7 746 58.6
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 9.4e-232 807.4 749 58.9
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 9.4e-232 807.4 746 58.3
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 9.4e-232 807.4 758 57.8
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.2e-231 807.0 740 58.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.2e-231 807.0 752 57.7
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.6e-231 806.6 739 60.4
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.6e-231 805.4 759 59.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.6e-231 805.1 752 58.5
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 7.9e-231 804.3 750 57.7
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 7.9e-231 804.3 759 56.4
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 7.9e-231 804.3 704 61.9
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.8e-230 803.1 752 58.8
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 2.3e-230 802.7 712 59.4
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.3e-230 802.7 750 59.2
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 3.9e-230 802.0 658 64.4
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 5.1e-230 801.6 748 58.6
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 6.7e-230 801.2 755 57.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 8.8e-230 800.8 788 56.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.1e-229 800.4 722 60.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.5e-229 800.0 780 56.2
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 5.7e-229 798.1 760 57.6
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.3e-228 797.0 748 58.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 6.5e-225 784.6 773 56.5
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 6.5e-225 784.6 711 60.1
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.7e-223 779.2 771 55.5
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.6e-223 778.9 754 57.8
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.8e-220 769.2 754 57.8
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.3e-220 768.1 655 62.4
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.4e-219 766.9 654 63.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 5.0e-217 758.4 745 55.7
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.7e-204 716.8 703 55.9
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.5e-200 703.7 748 53.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.1e-195 685.6 534 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 7.8e-186 654.8 616 55.8
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 6.8e-182 641.7 498 65.5
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.1e-170 603.6 729 48.4
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 3.2e-155 553.1 606 54.5
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.4e-150 537.0 566 53.2
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.7e-146 523.5 561 52.8
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.9e-134 482.3 524 53.1
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.3e-129 468.0 685 43.9
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 4.2e-115 419.9 425 52.7
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.8e-113 414.5 428 51.2
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.8e-108 396.7 429 50.3
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 3.2e-107 393.7 453 50.6
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 5.0e-100 369.8 431 46.9
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.0e-97 362.1 442 46.2
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.3e-89 334.3 420 45.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.5e-88 331.6 221 74.2
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.3e-87 328.6 358 49.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.8e-87 326.6 405 46.7
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.4e-86 323.2 519 41.8
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.4e-86 323.2 358 48.9
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 4.7e-82 310.1 261 63.6
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 4.4e-80 303.5 198 75.8
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 6.0e-61 240.0 160 76.9
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 4.3e-59 233.8 166 70.5
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 5.2e-49 200.3 135 72.6
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.1e-45 188.3 233 47.6
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.4e-41 175.6 128 66.4
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.2e-37 162.5 142 56.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.6e-37 162.2 161 50.3
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.7e-37 161.4 156 53.8
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.7e-36 158.7 93 77.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.5e-35 155.6 104 73.1
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 5.6e-35 153.7 111 66.7
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 2.0e-32 145.2 299 37.8
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 3.5e-29 134.4 93 68.8
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 8.7e-28 129.8 244 36.9
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.5e-27 129.0 116 55.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.5e-24 119.0 77 77.9
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.0e-24 118.6 80 67.5
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.1e-20 104.0 148 45.3
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.6e-19 100.5 145 44.8
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.1e-17 96.3 71 70.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 7.6e-16 90.1 75 64.0
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.1e-14 86.3 137 41.6
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 6.0e-13 80.5 54 61.1
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 2.3e-12 78.6 96 42.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 6.7e-12 77.0 54 57.4
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.1e-11 76.3 52 65.4
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 1.6e-10 72.4 52 63.5
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 4.5e-08 64.3 96 44.8
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.3e-07 62.8 36 83.3
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 6.5e-07 60.5 100 37.0
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 6.5e-07 60.5 137 30.7


User provided reference genes

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