Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 0.0e+00 1481.8 756 100.0
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 3.2e-179 632.9 745 46.3
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 3.9e-169 599.4 811 42.8
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.9e-169 599.4 826 42.3
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 2.4e-166 590.1 709 45.1
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 2.6e-165 586.6 724 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 3.5e-165 586.3 746 44.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.0e-164 584.7 809 42.0
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 3.8e-164 582.8 812 42.0
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 5.5e-163 578.9 832 40.7
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.0e-161 572.8 822 40.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 3.3e-160 569.7 747 42.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 9.7e-160 568.2 808 39.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 9.7e-160 568.2 822 41.0
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.2e-159 567.0 706 43.8
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.8e-159 566.6 728 43.1
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 8.2e-159 565.1 730 43.7
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 3.1e-158 563.1 747 42.0
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 5.3e-158 562.4 764 40.6
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.2e-157 561.2 739 42.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 7.7e-157 558.5 787 41.4
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.3e-156 557.8 790 40.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 8.5e-156 555.1 794 40.6
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.1e-155 554.7 709 43.9
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 3.2e-155 553.1 804 40.2
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 9.4e-155 551.6 723 42.3
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.6e-154 549.7 738 42.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 8.0e-154 548.5 790 39.9
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 8.0e-154 548.5 783 40.5
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.4e-153 547.7 720 42.9
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-153 547.7 815 39.3
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 2.3e-153 547.0 815 40.9
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 3.0e-153 546.6 741 41.7
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 8.8e-153 545.0 782 39.6
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.2e-152 544.7 716 42.0
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.6e-152 543.5 796 39.2
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.4e-152 543.1 744 41.9
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.7e-151 540.8 809 39.7
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 4.8e-151 539.3 808 39.5
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-151 538.9 798 38.7
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 8.3e-151 538.5 800 40.8
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.4e-150 537.7 699 42.9
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.4e-150 537.0 770 40.4
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.4e-150 537.0 791 40.1
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.1e-150 536.6 736 39.9
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 7.0e-150 535.4 807 39.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.6e-149 534.3 734 42.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.9e-149 532.3 709 41.6
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.3e-148 531.2 780 39.7
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.3e-148 531.2 821 39.1
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.7e-148 530.8 789 39.3
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 3.8e-148 529.6 779 40.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 6.5e-148 528.9 747 40.6
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 6.5e-148 528.9 810 39.0
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 6.5e-148 528.9 823 38.5
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 1.9e-147 527.3 785 40.3
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.5e-147 526.9 716 40.9
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 2.5e-147 526.9 792 40.9
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 4.2e-147 526.2 803 40.1
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 2.1e-146 523.9 668 43.6
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.1e-146 523.9 711 40.6
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 6.1e-146 522.3 723 41.5
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 6.1e-146 522.3 789 38.8
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.0e-145 521.5 783 39.7
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.4e-145 521.2 720 39.9
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.8e-145 520.8 805 39.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.8e-145 520.8 769 39.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 2.0e-144 517.3 798 37.7
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 9.8e-144 515.0 776 40.1
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 2.2e-143 513.8 720 40.7
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 4.9e-143 512.7 789 39.4
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 6.3e-143 512.3 808 38.9
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.1e-142 511.5 784 38.6
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.4e-142 510.4 819 38.0
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 7.0e-142 508.8 808 39.0
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 7.0e-142 508.8 804 38.3
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 1.6e-141 507.7 818 38.4
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 1.7e-140 504.2 714 40.2
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.7e-140 504.2 718 40.7
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.1e-139 501.5 711 42.5
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.5e-139 501.1 719 40.5
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 5.6e-139 499.2 702 40.9
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.6e-138 497.7 737 39.5
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.1e-138 497.3 702 40.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 2.1e-138 497.3 723 40.2
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.6e-138 496.5 801 38.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 4.7e-138 496.1 712 40.6
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 6.1e-138 495.7 738 39.6
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 8.9e-137 491.9 717 40.2
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 3.7e-135 486.5 713 39.0
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 4.9e-135 486.1 803 37.6
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 6.4e-135 485.7 683 41.7
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 6.4e-135 485.7 851 36.1
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.4e-134 482.6 793 37.7
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.0e-128 464.2 801 35.0
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 5.4e-126 456.1 568 44.2
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 2.0e-125 454.1 563 41.6
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 3.5e-125 453.4 799 35.9
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.2e-122 444.9 777 36.7
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.1e-121 440.3 481 45.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.2e-120 438.3 792 37.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 3.1e-113 413.7 758 36.3
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 5.4e-102 376.3 780 34.0
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.8e-97 361.3 586 37.2
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 3.4e-96 357.1 379 47.8
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.2e-93 348.6 386 46.1
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.1e-92 343.2 618 37.2
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 5.6e-91 339.7 558 39.4
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.1e-81 308.9 783 30.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 3.4e-72 277.3 427 38.2
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.4e-64 250.8 460 34.8
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.5e-62 244.6 386 38.9
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 9.7e-51 206.1 231 44.6
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.1e-45 188.3 422 32.7
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.4e-44 185.7 295 35.9
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.4e-41 174.9 392 33.2
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 8.0e-37 159.8 197 44.7
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.5e-35 155.6 388 30.7
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 2.2e-34 151.8 594 25.9
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.5e-24 117.9 85 55.3
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 2.0e-19 102.1 202 36.6
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.5e-16 91.3 187 31.0
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.9e-15 87.8 74 51.4
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 5.0e-15 87.4 98 50.0
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.8e-13 81.6 123 39.0
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-12 79.7 210 26.2
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.5e-11 75.9 364 25.5
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.4e-11 74.3 135 35.6
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.3e-07 62.0 276 23.9
Actinidia39107 Actinidia chinensis HOM05D000285 ORTHO05D000241 3.9e-07 61.2 83 41.0
Actinidia09036 Actinidia chinensis HOM05D000285 ORTHO05D000241 6.6e-07 60.5 83 41.0
TAR624G0529 Trochodendron aralioides HOM05D000285 ORTHO05D000241 6.6e-07 60.5 85 37.6
Nitab4.5_0000255g0260 Nicotiana tabacum HOM05D000285 ORTHO05D000241 1.1e-06 59.7 92 34.8
Nitab4.5_0005918g0040 Nicotiana tabacum HOM05D000285 ORTHO05D000241 1.1e-06 59.7 92 34.8
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.1e-06 59.7 276 23.2
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 1.5e-06 59.3 74 40.5
Sabra05G0117600 Salix brachista HOM05D002097 ORTHO05D002248 2.5e-06 58.5 79 36.7
TAR383G0749 Trochodendron aralioides HOM05D000285 ORTHO05D000241 2.5e-06 58.5 85 37.6
ATR0789G082 Amborella trichopoda HOM05D000285 ORTHO05D000241 3.3e-06 58.2 77 36.4
Os02g0221500 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 3.3e-06 58.2 83 37.3
Psat6g236560 Pisum sativum HOM05D006053 ORTHO05D008381 3.3e-06 58.2 97 34.0
Aqoxy5G03769 Aquilegia oxysepala HOM05D000285 ORTHO05D000241 4.3e-06 57.8 77 40.3
A01p40310 Brassica napus HOM05D000285 ORTHO05D000241 4.3e-06 57.8 103 33.0
CSS0026391 Camellia sinensis var. sinensis HOM05D000285 ORTHO05D000241 4.3e-06 57.8 77 37.7
MELO3C013338.2 Cucumis melo HOM05D002097 ORTHO05D002248 4.3e-06 57.8 84 35.7
CsaV3_7G001150 Cucumis sativus L. HOM05D002097 ORTHO05D002248 4.3e-06 57.8 84 35.7
Lalb_Chr08g0238731 Lupinus albus HOM05D002097 ORTHO05D002248 4.3e-06 57.8 62 41.9
PSO541G3518 Papaver somniferum HOM05D002097 ORTHO05D002248 4.3e-06 57.8 79 36.7
PSO675G4204 Papaver somniferum HOM05D002097 ORTHO05D002248 4.3e-06 57.8 79 36.7
Dinv37905 Davidia involucrata HOM05D000285 ORTHO05D000241 5.6e-06 57.4 77 36.4
Lj5A43G70 Lonicera japonica HOM05D000285 ORTHO05D000241 5.6e-06 57.4 77 37.7
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 5.6e-06 57.4 103 33.0
HPP92_007057 Vanilla planifolia HOM05D003377 ORTHO05D004080 5.6e-06 57.4 74 40.5
CAN.G341.13 Capsicum annuum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Cpa.g.sc20.102 Carica papaya HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 38.0
Duzib248G1200 Durio zibethinus HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 38.0
Gohir.A03G205600 Gossypium hirsutum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Gohir.D02G226900 Gossypium hirsutum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Gorai.005G254800 Gossypium raimondii HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Nn2g10473 Nelumbo nucifera HOM05D006053 ORTHO05D008381 9.5e-06 56.6 117 29.1
Nitab4.5_0004377g0050 Nicotiana tabacum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Potri.007G009800 Populus trichocarpa HOM05D002097 ORTHO05D002248 9.5e-06 56.6 92 34.8
PGR119G1124 Punica granatum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 62 40.3
PGR142G3836 Punica granatum HOM05D000285 ORTHO05D000241 9.5e-06 56.6 77 40.3
Solyc11g005170.2 Solanum lycopersicum HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
Sopen11g001170 Solanum pennellii HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7
TAR625G0001 Trochodendron aralioides HOM05D002097 ORTHO05D002248 9.5e-06 56.6 116 30.2
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 35.4
HPP92_016158 Vanilla planifolia HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 35.4
GSVIVG01022281001 Vitis vinifera HOM05D002097 ORTHO05D002248 9.5e-06 56.6 79 36.7


User provided reference genes

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