Gene: Sopen01g045380

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g045380
  • Transcript Identifier Sopen01g045380.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 102128232-102141437 : positive

Gene Family Information

  • ID HOM05D005319
  • #Genes/#Species 143/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g045380.1

Descriptions

  • Description A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. | EMBRYO DEFECTIVE 140 (EMB140) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: intracellular | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Lsm interaction , RNA-processing protein, HAT helix , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003107 HAT (Half-A-TPR) repeat
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR035979 RNA-binding domain superfamily
IPR008669 LSM-interacting domain
Mapman id Description
35.1 not assigned.annotated