Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 4.6e-103 377.9 185 100.0
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 2.7e-47 192.6 183 47.0
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.3e-44 181.4 179 46.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.4e-43 179.5 179 44.1
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 6.9e-43 177.9 179 46.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.6e-42 176.0 179 45.3
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 2.6e-42 176.0 180 46.1
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.6e-42 176.0 180 46.1
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.5e-42 175.3 179 44.7
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 5.9e-42 174.9 183 44.3
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 7.7e-42 174.5 179 46.9
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.0e-41 174.1 179 44.1
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-41 173.7 179 45.8
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.3e-41 173.7 179 44.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-41 173.3 179 46.4
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.7e-41 173.3 179 45.3
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-41 172.9 179 45.3
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.9e-41 172.6 179 43.0
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.9e-41 172.6 179 45.3
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.8e-41 172.2 180 43.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.0e-41 171.8 179 44.7
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.0e-41 171.8 179 44.1
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 5.0e-41 171.8 179 44.1
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.5e-41 171.0 179 44.1
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.5e-41 171.0 179 44.1
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 8.5e-41 171.0 181 42.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 8.5e-41 171.0 179 45.8
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 8.5e-41 171.0 179 45.8
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.4e-40 170.2 179 44.7
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-40 170.2 179 44.1
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.9e-40 169.9 179 44.7
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 2.5e-40 169.5 179 43.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.5e-40 169.5 179 45.3
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.5e-40 169.5 179 45.3
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.5e-40 169.5 179 45.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.5e-40 169.5 179 41.9
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 3.2e-40 169.1 182 43.4
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.2e-40 169.1 179 44.7
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.2e-40 168.7 179 43.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.2e-40 168.7 179 44.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 4.2e-40 168.7 179 43.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 4.2e-40 168.7 177 44.1
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 4.2e-40 168.7 179 46.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.2e-40 167.9 179 44.1
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 7.2e-40 167.9 179 41.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 7.2e-40 167.9 179 44.1
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 9.4e-40 167.5 179 43.6
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 9.4e-40 167.5 179 44.1
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.6e-39 166.8 179 43.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-39 166.4 179 43.6
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.1e-39 166.4 179 43.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 42.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 44.7
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 42.5
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 43.0
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 43.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.7e-39 166.0 179 44.7
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 3.6e-39 165.6 179 43.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.6e-39 165.2 179 43.0
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 6.1e-39 164.9 179 42.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 7.9e-39 164.5 177 43.5
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.9e-39 164.5 177 43.5
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.9e-39 164.5 179 43.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-38 163.7 179 41.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-38 163.7 179 41.9
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.8e-38 163.3 179 41.9
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.8e-38 163.3 179 42.5
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.3e-38 162.9 183 40.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.0e-38 162.5 179 43.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 3.0e-38 162.5 177 42.9
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 3.0e-38 162.5 170 45.3
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.9e-38 162.2 178 42.7
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 5.1e-38 161.8 175 43.4
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.1e-38 161.8 179 41.9
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 5.1e-38 161.8 177 43.5
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 6.7e-38 161.4 180 41.7
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 6.7e-38 161.4 179 41.9
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 8.8e-38 161.0 180 41.7
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-37 160.6 183 40.4
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.1e-37 160.6 179 41.3
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-37 160.6 179 42.5
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.5e-37 160.2 183 41.5
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.5e-37 160.2 175 41.1
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.0e-37 159.8 179 41.9
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.0e-37 159.8 175 41.1
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.6e-37 159.5 179 44.1
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.6e-37 159.5 179 41.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 3.3e-37 159.1 179 42.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.3e-37 159.1 180 42.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.3e-37 159.1 178 42.1
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 4.4e-37 158.7 183 40.4
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 4.4e-37 158.7 183 40.4
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 5.7e-37 158.3 179 41.9
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.3e-36 157.1 183 40.4
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.3e-36 157.1 183 40.4
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.3e-36 157.1 183 40.4
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.3e-36 157.1 179 41.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.7e-36 156.8 183 38.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.7e-36 156.8 180 42.2
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.7e-36 156.8 175 42.3
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.2e-36 156.4 179 40.2
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.8e-36 156.0 179 39.1
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.8e-36 156.0 179 40.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.8e-36 156.0 179 39.1
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.7e-36 155.6 190 40.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 3.7e-36 155.6 177 41.8
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 3.7e-36 155.6 179 39.1
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.7e-36 155.6 179 41.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 4.8e-36 155.2 177 43.5
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 6.3e-36 154.8 184 40.8
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.4e-35 153.7 179 39.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.4e-35 153.7 179 40.8
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.4e-35 153.7 179 40.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.8e-35 153.3 184 40.2
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.4e-35 152.9 184 40.8
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.4e-35 152.9 179 38.5
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.4e-35 152.9 184 41.3
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.1e-35 152.5 179 41.3
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.1e-35 152.1 181 37.0
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.1e-35 152.1 179 39.7
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.3e-35 151.8 179 39.1
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.3e-35 151.8 179 39.7
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 6.9e-35 151.4 179 39.7
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.6e-34 149.4 175 40.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.9e-33 146.0 180 40.0
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 5.0e-33 145.2 176 40.9
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.1e-32 144.1 179 40.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.9e-32 143.3 175 42.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 3.2e-32 142.5 181 38.7
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 3.0e-30 136.0 175 40.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 5.2e-30 135.2 174 39.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 5.2e-30 135.2 183 42.6
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.4e-27 127.1 196 38.3
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.5e-26 122.5 179 36.3
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 5.0e-25 118.6 183 34.4
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-23 114.0 113 42.5
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 6.1e-23 111.7 160 38.1
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 4.4e-21 105.5 159 35.2
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-19 100.9 117 44.4
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 7.5e-13 78.2 170 31.2
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 8.3e-12 74.7 96 34.4
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.4e-11 72.0 78 44.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 4.7e-07 58.9 49 46.9
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 3.0e-06 56.2 56 41.1
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.0e-06 56.2 56 41.1


User provided reference genes

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