Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 0.0e+00 1946.4 1016 100.0
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1249.2 1022 61.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1118.2 1017 58.0
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1083.9 1016 55.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 0.0e+00 1080.1 1035 55.9
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1077.8 1021 55.5
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1076.2 1016 54.9
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1075.5 1021 54.6
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 3.5e-311 1071.6 1022 54.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 4.9e-311 1071.2 1025 54.8
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 8.3e-311 1070.5 1023 55.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 8.3e-311 1070.5 1023 55.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 1.4e-310 1069.7 1033 55.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 2.4e-310 1068.9 1015 55.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 2.4e-310 1068.9 1022 55.3
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 3.1e-310 1068.5 1033 55.3
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 5.3e-310 1067.8 1025 54.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 6.9e-310 1067.4 1026 54.6
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 9.0e-310 1067.0 1024 54.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.5e-309 1066.2 1014 55.5
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 2.0e-309 1065.8 1023 55.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 5.8e-309 1064.3 1012 54.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 5.8e-309 1064.3 1036 54.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 2.2e-308 1062.4 1022 54.0
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 2.9e-308 1062.0 1021 53.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 4.9e-308 1061.2 1021 55.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 4.9e-308 1061.2 1020 54.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 6.4e-308 1060.8 1013 54.8
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 6.4e-308 1060.8 1021 54.4
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 1.1e-307 1060.1 1018 54.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 1.1e-307 1060.1 1026 55.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 3.2e-307 1058.5 1022 53.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 4.2e-307 1058.1 1019 54.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 5.4e-307 1057.7 1019 54.4
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 7.1e-307 1057.4 1026 54.9
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 9.3e-307 1057.0 1022 54.9
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 1.6e-306 1056.2 1023 54.5
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 1.6e-306 1056.2 1029 54.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 1.6e-306 1056.2 1021 54.0
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 2.1e-306 1055.8 1023 54.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 2.7e-306 1055.4 1022 55.2
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 3.5e-306 1055.0 1017 53.9
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 4.6e-306 1054.7 1018 54.7
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 1.0e-305 1053.5 1019 54.9
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 1.3e-305 1053.1 1022 54.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 1.7e-305 1052.7 1023 55.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 2.3e-305 1052.4 1026 54.3
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 3.0e-305 1052.0 1025 54.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 3.0e-305 1052.0 1025 54.1
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 3.9e-305 1051.6 1020 53.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 6.6e-305 1050.8 1028 54.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 6.6e-305 1050.8 1028 54.5
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 8.7e-305 1050.4 1023 54.3
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 1.5e-304 1049.7 1021 54.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 1.5e-304 1049.7 1024 54.4
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 1.5e-304 1049.7 1021 54.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 2.5e-304 1048.9 1037 54.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 7.4e-304 1047.3 1021 54.8
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 9.6e-304 1047.0 1026 54.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 9.6e-304 1047.0 1021 54.4
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 1.3e-303 1046.6 1018 54.4
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 1.3e-303 1046.6 1023 54.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 1.3e-303 1046.6 1011 54.5
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 1.6e-303 1046.2 1020 54.7
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 1.6e-303 1046.2 1021 54.4
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 1.6e-303 1046.2 1020 54.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 3.6e-303 1045.0 1024 54.6
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 3.6e-303 1045.0 1021 54.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 3.6e-303 1045.0 1012 54.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.8e-303 1044.6 1013 54.4
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 6.2e-303 1044.3 1026 53.8
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 3.1e-302 1042.0 1018 54.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 9.0e-302 1040.4 1022 54.7
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.2e-301 1040.0 1021 53.8
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 5.8e-301 1037.7 1020 52.8
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 2.2e-300 1035.8 1021 53.4
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.2e-300 1035.8 1053 51.9
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 2.9e-300 1035.4 1011 53.7
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 3.8e-300 1035.0 1037 54.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 5.5e-299 1031.2 1015 53.6
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 2.7e-298 1028.9 1025 53.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 4.6e-298 1028.1 1073 51.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 6.0e-298 1027.7 1021 52.9
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 7.9e-298 1027.3 1027 53.7
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 7.9e-298 1027.3 1024 53.6
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-297 1026.9 1019 53.9
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 3.0e-297 1025.4 1012 53.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 6.7e-297 1024.2 1014 53.6
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 6.7e-297 1024.2 1027 53.3
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 1.5e-296 1023.1 1019 53.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-296 1022.7 1019 53.5
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 3.3e-296 1021.9 1016 54.1
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 7.4e-296 1020.8 1039 53.2
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 6.2e-295 1017.7 1027 53.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 1.8e-294 1016.1 1011 52.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.3e-294 1014.6 1060 51.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 7.6e-293 1010.7 1022 52.8
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.7e-292 1009.6 1021 52.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 1.7e-292 1009.6 1033 52.6
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 3.8e-292 1008.4 1026 53.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-291 1006.9 1059 51.7
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-289 1000.0 1019 52.5
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 7.4e-288 994.2 1030 51.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 1.3e-287 993.4 1059 50.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 8.2e-287 990.7 1124 49.3
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 3.2e-283 978.8 1026 52.5
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 2.2e-279 966.1 958 53.1
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 3.1e-278 962.2 898 55.7
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.4e-270 936.8 883 55.7
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 3.4e-269 932.2 819 57.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 3.9e-265 918.7 1010 49.7
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 3.9e-265 918.7 956 50.6
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.8e-257 893.3 883 54.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 3.0e-257 892.5 1019 49.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.5e-256 890.2 1006 48.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 6.1e-250 868.2 1021 48.4
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 8.3e-231 804.7 706 58.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 4.3e-227 792.3 706 57.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-225 786.9 732 56.3
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 4.4e-208 729.2 610 60.5
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.0e-204 716.5 556 64.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 6.9e-201 705.3 1032 41.3
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-198 695.3 1011 40.9
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-191 674.1 1034 39.9
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 7.1e-190 668.7 1053 39.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-186 657.9 1028 39.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-182 644.0 966 40.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.2e-182 643.3 494 64.0
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.9e-179 634.0 549 60.8
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 5.6e-179 632.5 453 69.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.9e-158 564.3 422 66.8
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.7e-146 523.5 404 64.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.4e-145 521.5 441 59.2
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.5e-143 512.3 1035 34.2
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-137 493.8 472 54.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 3.6e-133 480.3 354 68.4
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 7.7e-128 462.6 554 46.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 8.0e-117 426.0 319 68.0
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.6e-115 421.0 1047 31.7
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-108 397.9 372 54.3
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-108 397.9 372 54.3
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.0e-108 397.1 387 53.2
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-102 377.9 376 54.0
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-96 359.0 562 39.0
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.6e-96 357.1 510 46.3
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.3e-94 350.5 415 45.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.9e-90 337.8 435 43.7
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 4.6e-80 303.9 562 35.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 2.5e-78 298.1 504 38.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-77 295.0 641 32.1
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.3e-71 275.0 199 67.8
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-63 248.8 205 60.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-50 204.1 389 36.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.3e-46 191.0 140 67.1
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.4e-44 186.0 314 37.9
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 6.5e-42 177.2 187 49.2
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.6e-40 172.6 293 37.5
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.0e-39 169.9 166 50.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.0e-39 168.3 299 34.1
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.5e-35 156.0 166 53.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.2e-34 152.1 284 34.5
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.6e-32 146.0 99 69.7
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.8e-29 134.4 231 37.7
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-26 125.2 222 36.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-25 122.9 120 51.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.4e-23 116.3 78 67.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-23 115.5 176 42.6
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 4.4e-22 111.3 396 27.5
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-21 109.4 127 44.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 7.0e-20 104.0 166 40.4
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 3.5e-19 101.7 138 42.8
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.0e-14 85.9 96 44.8
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.4e-14 85.1 71 53.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.6e-11 76.3 124 38.7


User provided reference genes

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