Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.3e-128 461.8 253 100.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.3e-76 290.4 231 68.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.2e-73 278.5 202 69.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.0e-72 276.6 242 62.8
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.0e-72 276.6 207 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.6e-72 276.2 232 65.9
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.4e-72 275.4 241 64.3
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 9.7e-72 274.2 208 66.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.3e-71 273.9 203 68.5
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.3e-71 271.6 207 69.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.4e-70 270.4 238 62.2
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.8e-70 270.0 238 62.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 4.1e-70 268.9 238 62.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 5.3e-70 268.5 202 68.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.1e-70 267.7 203 68.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.2e-69 267.3 209 67.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.2e-69 267.3 209 67.0
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.2e-69 267.3 239 59.4
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.0e-69 266.5 202 69.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.0e-69 266.5 203 68.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.0e-69 266.5 237 61.2
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 2.0e-69 266.5 237 61.2
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.6e-69 266.2 203 68.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-69 266.2 243 60.9
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 3.5e-69 265.8 205 65.9
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 5.9e-69 265.0 240 59.2
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 5.9e-69 265.0 238 59.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.9e-69 265.0 209 66.5
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 7.7e-69 264.6 239 61.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.0e-68 264.2 202 67.8
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.7e-68 263.5 203 67.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.7e-68 263.5 242 59.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.7e-68 263.5 237 59.1
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.2e-68 263.1 243 60.9
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.2e-68 263.1 202 69.3
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.9e-68 262.7 206 66.0
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.8e-68 262.3 238 60.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.8e-68 262.3 227 60.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.0e-68 261.9 238 59.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 6.5e-68 261.5 239 61.1
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.5e-68 261.2 238 60.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 8.5e-68 261.2 241 58.9
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.1e-67 260.8 202 66.8
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.1e-67 260.8 203 67.0
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-67 260.8 239 61.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.1e-67 260.8 238 60.1
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.5e-67 260.4 238 58.8
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.5e-67 260.4 238 59.7
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.9e-67 260.0 203 67.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-67 260.0 243 59.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-67 259.6 239 60.7
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.5e-67 259.6 238 60.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.5e-67 259.6 202 66.8
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.5e-67 259.6 208 62.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.2e-67 259.2 238 58.8
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 3.2e-67 259.2 198 68.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 4.2e-67 258.8 238 58.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 4.2e-67 258.8 227 61.2
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.2e-67 258.8 202 65.3
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 4.2e-67 258.8 202 66.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.2e-67 258.8 201 66.7
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 5.5e-67 258.5 203 65.5
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 5.5e-67 258.5 236 59.3
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 5.5e-67 258.5 238 60.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.5e-67 258.5 239 60.3
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 5.5e-67 258.5 203 67.0
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 5.5e-67 258.5 242 59.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.5e-67 258.5 204 66.7
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 7.2e-67 258.1 202 68.3
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.2e-66 257.3 227 62.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.2e-66 257.3 209 64.1
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.2e-66 257.3 238 59.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.2e-66 257.3 204 64.7
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.2e-66 257.3 203 64.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.6e-66 256.9 247 57.9
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.1e-66 256.5 203 64.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.7e-66 256.1 240 58.8
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.7e-66 255.4 209 62.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.0e-66 254.6 191 68.6
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 8.0e-66 254.6 238 57.6
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 8.0e-66 254.6 209 62.2
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 8.0e-66 254.6 246 58.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-65 254.2 239 59.8
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.4e-65 253.8 238 57.1
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.3e-65 253.1 200 66.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.0e-65 252.7 202 63.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.0e-65 252.7 204 63.2
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 4.0e-65 252.3 202 66.3
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.0e-65 252.3 238 58.0
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 5.2e-65 251.9 206 64.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 6.7e-65 251.5 211 62.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 6.7e-65 251.5 211 62.6
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 6.7e-65 251.5 204 63.2
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 6.7e-65 251.5 196 66.3
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.2e-64 250.8 212 62.3
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.5e-64 250.4 238 57.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.0e-64 250.0 219 61.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.0e-64 250.0 202 63.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.6e-64 249.6 219 62.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.6e-64 249.6 219 61.6
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.6e-64 249.6 197 66.0
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.7e-64 248.4 211 62.6
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.7e-64 248.4 219 62.1
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 7.5e-64 248.1 211 61.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 7.5e-64 248.1 211 61.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 7.5e-64 248.1 202 63.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 9.7e-64 247.7 206 62.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.3e-63 247.3 196 66.3
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.3e-63 247.3 219 61.6
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-63 246.9 220 60.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-63 246.9 231 58.4
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.2e-63 246.5 220 60.5
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.8e-63 246.1 199 64.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.8e-63 246.1 238 58.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.7e-63 245.7 239 56.5
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.7e-63 245.7 239 56.5
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 4.8e-63 245.4 239 56.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.8e-63 245.4 241 55.6
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.1e-62 244.2 238 56.7
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.4e-62 243.8 205 61.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.3e-62 241.9 193 65.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.2e-60 236.5 178 66.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.7e-58 228.8 212 60.4
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 2.3e-57 226.5 238 53.4
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.1e-54 217.6 180 62.2
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.2e-53 214.2 188 62.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 4.5e-45 185.7 149 63.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 3.6e-42 176.0 209 51.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 8.9e-41 171.4 215 47.4
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.4e-40 169.5 169 56.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.7e-39 167.2 229 44.1
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 5.4e-38 162.2 204 49.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 9.8e-32 141.4 130 54.6
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-30 137.1 109 60.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.0e-28 129.8 189 42.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 4.3e-27 125.9 238 37.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.2e-24 117.9 109 55.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-21 107.5 117 51.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 9.5e-19 98.2 191 33.5
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 3.1e-17 93.2 86 50.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.2e-15 87.0 93 60.2
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 7.1e-14 82.0 204 32.4
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.2e-13 81.3 88 55.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.2e-08 64.7 54 59.3


User provided reference genes

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