Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0198 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 0.0e+00 1684.1 875 100.0
SMO302G0008 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 4.3e-276 954.9 841 65.3
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 3.7e-163 579.7 945 43.7
SEGI_36671 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 2.1e-25 122.1 331 29.6
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 2.4e-24 118.6 318 30.5
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 2.9e-22 111.7 341 29.0
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 4.9e-22 110.9 658 23.9
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.8e-19 102.4 327 28.1
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 5.1e-19 100.9 446 25.8
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 4.8e-17 94.4 328 27.4
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 6.2e-17 94.0 301 27.9
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 4.0e-16 91.3 305 26.2
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.3e-16 90.9 396 26.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 9.0e-16 90.1 306 27.8
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 9.0e-16 90.1 311 27.3
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 2.6e-15 88.6 237 29.1
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 3.4e-15 88.2 239 27.2
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.5e-15 87.8 325 28.0
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 5.8e-15 87.4 393 24.9
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 5.8e-15 87.4 359 27.0
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 5.8e-15 87.4 331 29.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 7.6e-15 87.0 359 26.2
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 9.9e-15 86.7 237 30.4
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.3e-14 86.3 303 28.1
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 2.2e-14 85.5 232 29.3
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 2.9e-14 85.1 238 29.8
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.9e-14 85.1 303 27.7
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 3.8e-14 84.7 326 27.3
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 4.9e-14 84.3 303 28.4
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 6.4e-14 84.0 310 27.7
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.1e-13 83.2 303 27.7
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.4e-13 82.8 394 25.1
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.4e-13 82.8 231 30.7
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.9e-13 82.4 301 27.6
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.9e-13 82.4 303 27.7
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 3.2e-13 81.6 321 26.8
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 4.2e-13 81.3 310 26.8
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 4.2e-13 81.3 307 26.7
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 4.2e-13 81.3 303 28.4
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 5.5e-13 80.9 310 26.8
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 7.1e-13 80.5 153 32.0
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 9.3e-13 80.1 314 28.0
Cpa.g.sc119.1 Carica papaya HOM05D002653 ORTHO05D002623 1.2e-12 79.7 228 31.1
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.2e-12 79.7 320 26.9
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 1.6e-12 79.3 396 24.5
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.6e-12 79.3 392 25.3
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 2.1e-12 79.0 254 28.0
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.1e-12 79.0 152 31.6
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 2.7e-12 78.6 231 27.3
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 3.5e-12 78.2 314 28.0
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 3.5e-12 78.2 320 27.5
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 4.6e-12 77.8 341 26.1
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 6.0e-12 77.4 291 28.9
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.0e-11 76.6 314 26.1
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.3e-11 76.3 137 34.3
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 1.8e-11 75.9 294 28.2
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.8e-11 75.9 142 33.1
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.8e-11 75.9 142 33.1
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 2.3e-11 75.5 116 34.5
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 3.0e-11 75.1 321 24.9
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.9e-11 74.7 313 26.5
Hma1.2p1_2738F.1_g327720 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.1e-11 74.3 260 26.5
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 5.1e-11 74.3 116 34.5
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.7e-11 73.9 312 26.3
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 6.7e-11 73.9 284 26.4
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 8.7e-11 73.6 50 62.0
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 8.7e-11 73.6 313 26.2
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-10 73.2 72 45.8
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-10 73.2 72 45.8
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 1.1e-10 73.2 285 25.6
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 1.1e-10 73.2 312 25.3
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.1e-10 73.2 312 25.3
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 1.5e-10 72.8 70 44.3
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.5e-10 72.8 235 28.5
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 2.5e-10 72.0 72 45.8
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 2.5e-10 72.0 72 44.4
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.5e-10 72.0 313 26.8
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 3.3e-10 71.6 72 45.8
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 3.3e-10 71.6 53 52.8
CBR_g47049 Chara braunii HOM05D002653 ORTHO05D002623 3.3e-10 71.6 86 41.9
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.3e-10 71.6 313 26.5
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 5.6e-10 70.9 50 58.0
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 5.6e-10 70.9 313 26.5
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 5.6e-10 70.9 72 41.7
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 5.6e-10 70.9 294 26.2
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 7.4e-10 70.5 238 27.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 7.4e-10 70.5 72 41.7
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 7.4e-10 70.5 289 27.3
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 9.6e-10 70.1 70 44.3
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 9.6e-10 70.1 70 44.3
Ca_27667_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.3e-09 69.7 282 28.4
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 1.3e-09 69.7 86 43.0
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.6e-09 69.3 313 26.5
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.6e-09 69.3 245 27.8
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 1.6e-09 69.3 50 54.0
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 4.8e-09 67.8 104 35.6
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 4.8e-09 67.8 136 33.1
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.4e-08 66.2 72 41.7
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.4e-08 66.2 157 29.3
Migut.L00839 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.8e-08 65.9 245 26.9
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 1.8e-08 65.9 72 41.7
VMungo0251G0195 Vigna mungo HOM05D002653 ORTHO05D002623 4.0e-08 64.7 288 26.0
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 6.9e-08 63.9 100 32.0
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.5e-07 62.8 50 48.0
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 5.8e-07 60.8 306 25.5
Lsat_1_v5_gn_1_69101 Lactuca sativa HOM05D002653 ORTHO05D002623 1.3e-06 59.7 90 35.6
SEGI_11936 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.3e-06 59.7 38 63.2


User provided reference genes

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