Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.2e-245 852.8 455 100.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 3.8e-135 485.7 380 64.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.0e-133 478.0 369 66.4
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.1e-125 453.4 364 64.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.7e-122 442.6 367 63.5
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.0e-115 420.2 365 59.7
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.4e-115 419.1 368 59.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.7e-114 417.2 404 56.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.7e-114 417.2 364 58.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.8e-114 416.4 373 58.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.8e-114 416.4 368 58.7
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.8e-114 416.4 368 58.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.8e-114 416.4 395 55.7
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 3.7e-114 416.0 374 57.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 8.3e-114 414.8 362 58.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 8.3e-114 414.8 367 59.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.1e-113 414.5 396 56.1
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.4e-113 414.1 403 55.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.4e-113 414.1 374 58.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.4e-113 414.1 367 58.9
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.8e-113 413.7 391 56.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.4e-113 413.3 374 58.8
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.1e-113 412.9 368 58.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.1e-113 412.9 382 57.1
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.1e-113 412.5 369 58.5
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 4.1e-113 412.5 393 54.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.4e-113 412.1 377 57.3
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.4e-113 412.1 364 58.8
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.4e-113 412.1 399 56.1
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 7.0e-113 411.8 368 58.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 7.0e-113 411.8 405 53.3
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 7.0e-113 411.8 377 57.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 7.0e-113 411.8 391 56.5
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 9.2e-113 411.4 371 57.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-112 411.0 371 58.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.0e-112 410.2 374 58.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.0e-112 410.2 374 57.8
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.7e-112 409.8 400 53.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.7e-112 409.8 369 57.5
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.7e-112 409.8 374 57.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.7e-112 409.8 371 58.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.5e-112 409.5 369 57.5
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.5e-112 409.5 420 53.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.5e-112 409.5 420 53.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.5e-112 409.5 374 57.8
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.5e-112 409.1 365 56.7
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 5.9e-112 408.7 383 56.4
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 5.9e-112 408.7 362 58.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 7.8e-112 408.3 369 58.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.0e-111 407.9 360 59.2
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.0e-111 407.9 387 56.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-111 407.1 407 53.6
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-111 407.1 407 53.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.7e-111 407.1 407 53.6
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.3e-111 406.8 384 55.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.9e-111 406.4 370 58.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.9e-111 406.4 371 58.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.8e-111 406.0 370 56.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.6e-111 405.2 380 58.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 6.6e-111 405.2 393 56.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.6e-111 404.8 369 57.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.6e-111 404.8 399 53.6
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 8.6e-111 404.8 372 55.6
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.1e-110 404.4 369 56.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-110 404.4 369 56.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.1e-110 404.4 371 57.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.1e-110 404.4 371 57.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.5e-110 404.1 369 56.6
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.5e-110 404.1 383 55.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.5e-110 404.1 382 55.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.9e-110 403.7 369 56.6
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.5e-110 403.3 383 55.1
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.5e-110 403.3 429 52.2
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.5e-110 403.3 371 57.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.3e-110 402.9 371 57.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.3e-110 402.9 383 55.9
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.3e-110 402.5 369 57.5
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.3e-110 402.5 371 57.7
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.3e-110 402.5 371 58.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.3e-110 402.5 371 58.0
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.3e-110 402.5 371 56.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.6e-110 402.1 389 55.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 5.6e-110 402.1 369 57.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.3e-110 401.7 369 56.4
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.5e-110 401.4 371 57.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.5e-110 401.4 374 55.6
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-109 401.0 374 56.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.2e-109 401.0 383 55.4
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 2.8e-109 399.8 369 57.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.8e-109 399.8 371 56.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.8e-109 399.8 364 57.1
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.6e-109 399.4 388 55.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.0e-108 397.9 408 53.2
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.2e-108 395.6 363 55.9
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 8.9e-108 394.8 367 55.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 8.9e-108 394.8 384 54.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.2e-107 394.4 371 55.3
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.6e-107 393.3 371 55.0
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 7.5e-107 391.7 360 56.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.3e-106 391.0 410 52.7
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.9e-105 387.1 370 57.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-105 386.7 373 53.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 5.4e-105 385.6 374 54.5
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.5e-104 382.9 369 56.6
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.5e-104 382.9 369 56.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.9e-103 379.4 359 56.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.9e-103 379.4 374 54.5
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 8.6e-103 378.3 339 57.5
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-99 367.9 358 54.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.0e-99 367.1 369 53.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 7.0e-97 358.6 363 55.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.5e-96 356.3 370 52.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 4.6e-96 355.9 367 52.0
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.2e-93 347.8 309 57.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.1e-93 347.1 374 49.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.0e-91 340.5 382 50.0
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 3.7e-90 336.3 294 59.2
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.4e-90 335.5 306 57.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.1e-84 316.6 305 53.8
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 7.6e-83 312.0 295 54.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 6.4e-82 308.9 284 56.0
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 3.5e-80 303.1 342 49.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 9.6e-78 295.0 280 56.4
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.2e-77 292.4 278 54.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 9.6e-70 268.5 281 51.6
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 6.2e-53 212.6 287 44.6
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 4.8e-45 186.4 327 38.5
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.4e-39 168.3 146 59.6
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.5e-33 147.5 117 61.5
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 7.2e-33 146.0 114 76.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-30 138.3 339 32.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-30 137.9 164 42.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-29 135.2 111 59.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-24 118.6 102 57.8
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.1e-24 116.3 99 58.6
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.7e-21 107.1 213 35.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 8.2e-21 105.9 73 74.0
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-20 104.4 167 37.7
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.8e-15 88.2 75 58.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 7.5e-14 82.8 530 24.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.7e-11 72.8 82 52.4
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.8e-07 59.7 53 54.7


User provided reference genes

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