Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.2e-209 733.0 396 100.0
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 3.0e-75 286.6 403 41.7
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 3.9e-75 286.2 396 40.7
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 1.1e-74 284.6 400 43.8
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 2.5e-74 283.5 401 40.4
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 3.3e-74 283.1 396 40.9
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 3.3e-74 283.1 385 43.9
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 9.5e-74 281.6 399 40.1
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 9.5e-74 281.6 406 40.9
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 1.2e-73 281.2 410 40.0
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.6e-73 280.8 391 43.0
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 2.8e-73 280.0 407 41.0
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 2.8e-73 280.0 400 41.0
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 4.7e-73 279.3 420 39.3
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 4.7e-73 279.3 393 41.2
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 8.1e-73 278.5 403 41.9
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.1e-72 278.1 398 39.9
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.4e-72 277.7 399 40.4
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 1.4e-72 277.7 393 40.5
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.8e-72 277.3 402 40.3
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 2.3e-72 276.9 398 39.9
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 2.3e-72 276.9 398 39.9
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 8.9e-72 275.0 410 40.0
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.2e-71 274.6 399 39.8
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.2e-71 274.6 390 40.8
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 1.2e-71 274.6 409 40.8
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 1.5e-71 274.2 399 40.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 2.0e-71 273.9 392 40.8
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 2.6e-71 273.5 397 41.1
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 5.8e-71 272.3 420 38.6
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 7.5e-71 271.9 397 40.3
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 7.5e-71 271.9 421 39.9
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 1.7e-70 270.8 422 40.8
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.7e-70 270.8 399 40.1
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 3.7e-70 269.6 397 39.5
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.7e-70 269.6 393 41.7
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 3.7e-70 269.6 386 39.1
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 4.9e-70 269.2 397 39.5
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 4.9e-70 269.2 397 39.5
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 6.4e-70 268.9 397 39.5
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 6.4e-70 268.9 397 38.8
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 8.3e-70 268.5 398 40.5
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 8.3e-70 268.5 415 39.5
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 1.9e-69 267.3 391 39.4
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 1.9e-69 267.3 391 39.4
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 2.4e-69 266.9 399 41.9
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 4.1e-69 266.2 422 38.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 4.1e-69 266.2 407 39.6
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 4.1e-69 266.2 397 39.3
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 5.4e-69 265.8 411 41.4
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 7.1e-69 265.4 391 40.9
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 9.2e-69 265.0 412 37.9
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 9.2e-69 265.0 402 39.3
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 1.2e-68 264.6 399 40.6
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 1.6e-68 264.2 400 38.0
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.6e-68 264.2 386 40.2
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.6e-68 264.2 386 40.2
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 2.7e-68 263.5 393 39.2
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 3.5e-68 263.1 386 38.6
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 4.6e-68 262.7 389 39.8
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 4.6e-68 262.7 396 41.2
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.0e-67 261.5 398 39.2
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.3e-67 261.2 397 38.0
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-67 260.8 391 40.4
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-67 260.8 391 40.4
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 2.3e-67 260.4 391 38.4
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 3.0e-67 260.0 393 38.9
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 3.0e-67 260.0 403 40.4
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.9e-67 259.6 400 41.5
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.9e-67 259.6 400 41.5
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 6.6e-67 258.8 389 37.8
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 8.6e-67 258.5 401 39.2
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 8.6e-67 258.5 407 38.8
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 1.5e-66 257.7 397 39.3
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 1.9e-66 257.3 415 43.6
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 1.9e-66 257.3 386 39.4
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.9e-66 257.3 388 39.9
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 2.5e-66 256.9 398 38.7
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.5e-66 256.9 398 38.7
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.5e-66 256.9 398 38.7
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 2.5e-66 256.9 397 39.3
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 3.3e-66 256.5 409 38.4
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.6e-66 255.8 390 38.2
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.2e-65 254.6 386 39.6
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.2e-65 254.6 397 39.5
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.6e-65 254.2 400 38.5
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 1.6e-65 254.2 424 39.2
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 3.6e-65 253.1 402 38.8
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.1e-64 251.5 397 38.5
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 1.1e-64 251.5 377 39.3
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 1.1e-64 251.5 400 38.2
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.1e-64 251.5 409 38.1
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.4e-64 251.1 394 39.3
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.4e-64 251.1 394 38.1
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 1.4e-64 251.1 369 41.5
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.4e-64 251.1 403 37.2
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.4e-64 251.1 390 38.7
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.4e-64 250.4 399 38.1
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 1.2e-63 248.1 397 39.0
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 1.2e-63 248.1 407 37.6
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.0e-63 247.3 370 40.5
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 2.6e-63 246.9 395 36.2
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 2.6e-63 246.9 408 37.3
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 3.4e-63 246.5 393 39.2
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 3.4e-63 246.5 397 36.8
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 3.4e-63 246.5 396 37.4
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 4.4e-63 246.1 406 36.9
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 5.8e-63 245.7 400 37.8
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 5.8e-63 245.7 386 37.6
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 7.6e-63 245.4 399 36.6
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 7.6e-63 245.4 395 38.2
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 9.9e-63 245.0 371 40.4
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.3e-62 244.6 398 37.2
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 1.7e-62 244.2 397 37.0
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 1.7e-62 244.2 397 38.0
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 2.2e-62 243.8 387 37.0
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 2.2e-62 243.8 401 36.9
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 2.9e-62 243.4 400 39.5
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 3.8e-62 243.0 394 38.1
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 3.8e-62 243.0 397 37.8
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 4.9e-62 242.7 427 42.9
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 1.4e-61 241.1 396 36.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 3.2e-61 240.0 438 36.5
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 3.2e-61 240.0 405 36.5
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 1.6e-60 237.7 405 35.8
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.3e-59 234.6 399 36.1
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 8.7e-59 231.9 360 37.5
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 2.5e-58 230.3 399 36.8
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 4.3e-58 229.6 406 37.2
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 2.8e-57 226.9 410 37.8
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.4e-56 224.6 363 37.2
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 3.1e-56 223.4 409 33.7
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 3.4e-55 219.9 421 34.4
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 8.4e-54 215.3 364 37.4
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 1.1e-53 214.9 352 36.9
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 2.4e-53 213.8 399 33.8
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.2e-53 213.4 349 38.7
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 7.1e-53 212.2 347 38.0
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 9.3e-53 211.8 376 35.4
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 4.8e-49 199.5 176 54.0
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 1.1e-48 198.4 176 53.4
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.1e-48 198.4 176 54.0
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 1.5e-47 194.5 402 32.3
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 7.6e-47 192.2 176 52.3
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 3.8e-46 189.9 389 33.4
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 6.4e-46 189.1 176 51.1
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 7.9e-44 182.2 155 54.8
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 1.8e-43 181.0 173 50.3
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 1.1e-42 178.3 329 36.5
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.3e-42 176.4 386 33.7
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 6.9e-40 169.1 164 50.6
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 4.5e-39 166.4 300 36.7
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 5.8e-39 166.0 137 52.6
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 1.8e-35 154.5 187 46.5
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 7.9e-28 129.0 172 36.6
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 5.7e-26 122.9 339 28.9
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 3.1e-24 117.1 117 53.0
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 3.4e-23 113.6 117 51.3
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 1.3e-22 111.7 117 47.9
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 7.2e-21 105.9 318 27.0
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 3.6e-20 103.6 118 46.6
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 7.9e-20 102.4 102 46.1
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 6.7e-19 99.4 107 46.7
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 9.7e-18 95.5 120 42.5
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 3.7e-17 93.6 85 51.8
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 6.3e-17 92.8 106 45.3
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.4e-16 91.7 117 41.0
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 1.8e-16 91.3 118 43.2
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 2.6e-15 87.4 116 42.2
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 3.4e-15 87.0 61 62.3
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 4.5e-15 86.7 117 42.7
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 9.4e-13 79.0 116 37.9
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.2e-12 78.6 85 50.6
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.2e-12 78.6 85 50.6
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.2e-12 78.6 74 59.5
MCO11G622 Micromonas commoda HOM05D003624 ORTHO05D004188 6.1e-12 76.3 119 39.5
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 1.7e-09 68.2 64 60.9
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 2.8e-09 67.4 69 42.0
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 1.8e-08 64.7 93 36.6
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 4.1e-08 63.5 81 43.2
TAR625G1177 Trochodendron aralioides HOM05D003624 ORTHO05D004188 3.5e-07 60.5 84 40.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.5e-07 60.1 99 36.4
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 4.5e-07 60.1 80 46.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.2e-06 57.8 109 33.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.8e-06 57.0 89 40.4
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 6.5e-06 56.2 61 55.7


User provided reference genes

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