Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0156 Selaginella moellendorffii HOM05D018139 ORTHO05D376765 2.7e-252 874.8 419 100.0
SMO167G0047 Selaginella moellendorffii HOM05D018139 ORTHO05D375945 1.4e-27 128.3 88 72.7
SMO236G0028 Selaginella moellendorffii HOM05D018139 ORTHO05D376100 1.7e-25 121.3 73 76.7
SMO347G0225 Selaginella moellendorffii HOM05D003078 ORTHO05D003545 4.0e-14 83.6 145 40.7
BcaB02g10618 Brassica carinata HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
BcaC01g02375 Brassica carinata HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
A06p27910 Brassica napus HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
C03p65960 Brassica napus HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
BolC3t18854H Brassica oleracea HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
BraA06t25732Z Brassica rapa HOM05D003078 ORTHO05D003545 1.6e-10 71.6 43 79.1
Aa31LG4G17330 Aethionema arabicum HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
BcaB05g22987 Brassica carinata HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
A01p25220 Brassica napus HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
BraA01t02432Z Brassica rapa HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
Duzib084G0449 Durio zibethinus HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
Eucgr.K02201 Eucalyptus grandis HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 79.1
Sp5g13240 Schrenkiella parvula HOM05D003078 ORTHO05D003545 2.1e-10 71.2 43 76.7
AL5G28290 Arabidopsis lyrata HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 76.7
AT3G48780 Arabidopsis thaliana HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 76.7
Carub.0005s1495 Capsella rubella HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 76.7
HanXRQChr09g0273591 Helianthus annuus HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 74.4
Lsat_1_v5_gn_5_10500 Lactuca sativa HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 76.7
SHI14208 Sapria himalayana HOM05D003078 ORTHO05D003545 2.7e-10 70.9 43 74.4
Hund02483 Selenicereus undatus HOM05D003078 ORTHO05D003545 2.7e-10 70.9 46 71.7
Ah.11g046580 Amaranthus hybridus HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Aqoxy3G01793 Aquilegia oxysepala HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
MSTRG.22883 Avicennia marina HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
AUR62029525 Chenopodium quinoa HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
AUR62034784 Chenopodium quinoa HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
ClCG06G018230 Citrullus lanatus HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 76.7
COL.COLO4_16693 Corchorus olitorius HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
MELO3C026175.2 Cucumis melo HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 76.7
CsaV3_1G000200 Cucumis sativus L. HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 76.7
Dinv11216 Davidia involucrata HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Duzib068G1399 Durio zibethinus HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Lalb_Chr22g0360011 Lupinus albus HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 72.1
Nn4g22188 Nelumbo nucifera HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Potri.012G104500 Populus trichocarpa HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Sed0009874 Sechium edule HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 76.7
Hund10073 Selenicereus undatus HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
Sc04g0000300 Simmondsia chinensis HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
THA.LOC104798919 Tarenaya hassleriana HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 76.7
Thecc.03G137600 Theobroma cacao HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
GSVIVG01008621001 Vitis vinifera HOM05D003078 ORTHO05D003545 3.5e-10 70.5 43 74.4
AL6G34940 Arabidopsis lyrata HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
AT5G23670 Arabidopsis thaliana HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
BcaC09g49902 Brassica carinata HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
C01p31490 Brassica napus HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
BolC1t03083H Brassica oleracea HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
Carub.0006s2142 Capsella rubella HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
CAN.G65.80 Capsicum annuum HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
CARHR189870 Cardamine hirsuta HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
Cfa018729 Carpinus fangiana HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
CiPaw.11G002100 Carya illinoinensis HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
CiPaw.11G002200 Carya illinoinensis HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
Haze_07121 Corylus avellana HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
Lj9C484T8 Lonicera japonica HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
Manes.06G124900 Manihot esculenta HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
PSO675G1150 Papaver somniferum HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
PSO675G8470 Papaver somniferum HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
Peaxi162Scf00171g00522 Petunia axillaris HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
Peaxi162Scf00643g00660 Petunia axillaris HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
Sabra12G0076900 Salix brachista HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
Solyc06g072320.4 Solanum lycopersicum HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
Sopen06g028690 Solanum pennellii HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 74.4
SGA_v2.0_scaffold40G15635 Striga asiatica HOM05D003078 ORTHO05D003545 4.6e-10 70.1 43 72.1
EL10Ac5g11331 Beta vulgaris HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
CSS0030402 Camellia sinensis var. sinensis HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
CAN.G637.14 Capsicum annuum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 72.1
CARHR157560 Cardamine hirsuta HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
Cpa.g.sc70.85 Carica papaya HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
ECA246G0036 Erigeron canadensis HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
Thhalv10010322m.g Eutrema salsugineum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
FvH4_6g54160 Fragaria vesca HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
FAN09G4122 Fragaria x ananassa HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
FAN14G1125 Fragaria x ananassa HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
Gohir.A12G192800 Gossypium hirsutum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
HanXRQChr05g0152901 Helianthus annuus HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
MBI11_g37086_MAGBIO Magnolia biondii HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
MD09G1004800 Malus domestica HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
MD17G1008800 Malus domestica HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
Nitab4.5_0001180g0130 Nicotiana tabacum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 72.1
PSO017G2895 Papaver somniferum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
PSO229G0086 Papaver somniferum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
PSO478G2975 Papaver somniferum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
Prupe.3G312000 Prunus persica HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
QL10p001065 Quercus lobata HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
RcHm_v2.0_Chr2g0176331 Rosa chinensis HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 69.8
Sopen03g028920 Solanum pennellii HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 72.1
PGSC0003DMG400026961 Solanum tuberosum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
PGSC0003DMG400031057 Solanum tuberosum HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 72.1
unitig_0.g1258 Utricularia gibba HOM05D003078 ORTHO05D003545 6.0e-10 69.7 43 74.4
Actinidia18320 Actinidia chinensis HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
arahy.Tifrunner.gnm1.ann1.0IR88Q Arachis hypogaea HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
arahy.Tifrunner.gnm1.ann1.0KJ6B5 Arachis hypogaea HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
MSTRG.9347 Avicennia marina HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
Gohir.D12G194900 Gossypium hirsutum HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
Gorai.008G209600 Gossypium raimondii HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
Manes.14G046600 Manihot esculenta HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
Nitab4.5_0003066g0060 Nicotiana tabacum HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 69.8
Oeu030644.1 Olea europaea HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 74.4
Sabra15G0123600 Salix brachista HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
TAR629G0860 Trochodendron aralioides HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 74.4
HPP92_001930 Vanilla planifolia HOM05D003078 ORTHO05D003545 7.9e-10 69.3 43 72.1
AL5G28300 Arabidopsis lyrata HOM05D003078 ORTHO05D003545 1.0e-09 68.9 121 36.4
Ciclev10015046m.g Citrus clementina HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
Haze_14931 Corylus avellana HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
DCAR_021415 Daucus carota HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
Duzib264G0999 Durio zibethinus HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 67.4
Glyma.02G065400 Glycine max HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
Lalb_Chr14g0363921 Lupinus albus HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
PSO675G3711 Papaver somniferum HOM05D003078 ORTHO05D003545 1.0e-09 68.9 42 76.2
TWI32G1334 Tripterygium wilfordii HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
TWI34G0005 Tripterygium wilfordii HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
GSVIVG01033008001 Vitis vinifera HOM05D003078 ORTHO05D003545 1.0e-09 68.9 43 69.8
Dinv23199 Davidia involucrata HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 72.1
Glyma.16G146500 Glycine max HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
Lj4g0003714 Lotus japonicus HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
Lalb_Chr02g0156801 Lupinus albus HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
Os11g0516000 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 72.1
Potri.015G103800 Populus trichocarpa HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 72.1
QL02p069970 Quercus lobata HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
Rhsim08G0195100 Rhododendron simsii HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 69.8
SGA_v2.0_scaffold74G24702 Striga asiatica HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 72.1
Thecc.04G044900 Theobroma cacao HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
vmacro19160 Vaccinium macrocarpon HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 69.8
VMungo0464G2149 Vigna mungo HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 67.4
Zm00001eb170240 Zea mays HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 72.1
Zm00001eb363730 Zea mays HOM05D003078 ORTHO05D003545 1.3e-09 68.6 43 69.8
CDE02G2903 Ceratophyllum demersum HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 72.1
FAN05G2586 Fragaria x ananassa HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 67.4
Hma1.2p1_0093F.1_g047030 Hydrangea macrophylla HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 72.1
Medtr6g033290 Medicago truncatula HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 65.1
Os01g0928800 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 69.8
PSO229G0106 Papaver somniferum HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 72.1
Pp3c5_18790 Physcomitrium patens HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 76.7
Pp3c5_18804 Physcomitrium patens HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 76.7
Prupe.5G144700 Prunus persica HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 67.4
TPR.G36680 Trifolium pratense HOM05D003078 ORTHO05D003545 1.8e-09 68.2 43 65.1
Atru.chr6.2634 Acer truncatum HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 67.4
Aqoxy4G02206 Aquilegia oxysepala HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 72.1
CANSAT64G2804 Cannabis sativa HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 67.4
HanXRQChr10g0288551 Helianthus annuus HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 74.4
Phvul.004G071100 Phaseolus vulgaris HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 67.4
PRCOL_00003312 Prasinoderma coloniale HOM05D003078 ORTHO05D003545 2.3e-09 67.8 46 67.4
QL02p070001 Quercus lobata HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 67.4
TAR371G0736 Trochodendron aralioides HOM05D003078 ORTHO05D003545 2.3e-09 67.8 43 69.8
ATR0661G050 Amborella trichopoda HOM05D003078 ORTHO05D003545 3.0e-09 67.4 43 72.1
Ca_26476_v3 Cicer arietinum L. HOM05D003078 ORTHO05D003545 3.0e-09 67.4 43 67.4
Migut.D01228 Erythranthe guttata HOM05D003078 ORTHO05D003545 3.0e-09 67.4 43 69.8
Manes.04G091700 Manihot esculenta HOM05D003078 ORTHO05D003545 3.0e-09 67.4 43 67.4
Mapoly0006s0093 Marchantia polymorpha HOM05D003078 ORTHO05D003545 3.0e-09 67.4 46 69.6
PGR044G0798 Punica granatum HOM05D003078 ORTHO05D003545 3.0e-09 67.4 43 74.4
Cfa007178 Carpinus fangiana HOM05D003078 ORTHO05D003545 3.9e-09 67.0 43 65.1
Ciclev10017847m.g Citrus clementina HOM05D003078 ORTHO05D003545 3.9e-09 67.0 43 65.1
Cc04_g09460 Coffea canephora HOM05D003078 ORTHO05D003545 3.9e-09 67.0 43 67.4
COL.COLO4_13342 Corchorus olitorius HOM05D003078 ORTHO05D003545 3.9e-09 67.0 43 67.4
Nn3g16315 Nelumbo nucifera HOM05D003078 ORTHO05D003545 3.9e-09 67.0 43 69.8
AT3G48790 Arabidopsis thaliana HOM05D003078 ORTHO05D003545 5.1e-09 66.6 43 74.4
Psat1g097640 Pisum sativum HOM05D003078 ORTHO05D003545 5.1e-09 66.6 43 67.4
Ah.02g114690 Amaranthus hybridus HOM05D003078 ORTHO05D003545 8.7e-09 65.9 43 72.1
MBI07_g36276_MAGBIO Magnolia biondii HOM05D003078 ORTHO05D003545 8.7e-09 65.9 43 67.4
Sabra15G0123500 Salix brachista HOM05D003078 ORTHO05D003545 8.7e-09 65.9 43 69.8
DCAR_026256 Daucus carota HOM05D003078 ORTHO05D003545 1.1e-08 65.5 43 67.4
Os01g0928700 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.1e-08 65.5 43 72.1
ECA246G2584 Erigeron canadensis HOM05D003078 ORTHO05D003545 1.5e-08 65.1 43 72.1
Zm00001eb113010 Zea mays HOM05D003078 ORTHO05D003545 1.5e-08 65.1 43 69.8
Zm00001eb170230 Zea mays HOM05D003078 ORTHO05D003545 1.5e-08 65.1 43 67.4
CAN.G27.68 Capsicum annuum HOM05D003078 ORTHO05D003545 1.9e-08 64.7 43 67.4
Os01g0928600 Oryza sativa ssp. japonica HOM05D003078 ORTHO05D003545 1.9e-08 64.7 52 59.6
Zm00001eb393370 Zea mays HOM05D003078 ORTHO05D003545 1.9e-08 64.7 43 69.8
AagrBONN_evm.TU.Sc2ySwM_117.72 Anthoceros agrestis HOM05D003078 ORTHO05D003545 2.5e-08 64.3 46 63.0
Zm00001eb326120 Zea mays HOM05D003078 ORTHO05D003545 3.3e-08 63.9 43 67.4
CBR_g54204 Chara braunii HOM05D003078 ORTHO05D003545 4.3e-08 63.5 46 67.4
Sopen06g009940 Solanum pennellii HOM05D003078 ORTHO05D003545 5.6e-08 63.2 43 67.4
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 5.6e-08 63.2 43 67.4
A06p27920 Brassica napus HOM05D003078 ORTHO05D003545 7.4e-08 62.8 43 65.1
BraA06t25733Z Brassica rapa HOM05D003078 ORTHO05D003545 7.4e-08 62.8 43 65.1
CARHR157590 Cardamine hirsuta HOM05D003078 ORTHO05D003545 1.3e-07 62.0 43 65.1
CBR_g8908 Chara braunii HOM05D003078 ORTHO05D003545 1.3e-07 62.0 46 60.9
BcaB02g09566 Brassica carinata HOM05D003078 ORTHO05D003545 2.8e-07 60.8 43 65.1
Cre04.g230144 Chlamydomonas reinhardtii HOM05D003078 ORTHO05D003545 2.8e-07 60.8 122 32.0
CARHR157580 Cardamine hirsuta HOM05D003078 ORTHO05D003545 4.8e-07 60.1 43 65.1
C03p65950 Brassica napus HOM05D003078 ORTHO05D003545 6.2e-07 59.7 43 62.8
Solyc06g030590.3 Solanum lycopersicum HOM05D003078 ORTHO05D003545 6.2e-07 59.7 43 65.1
BcaC01g02376 Brassica carinata HOM05D003078 ORTHO05D003545 4.0e-06 57.0 43 60.5
BolC3t18853H Brassica oleracea HOM05D003078 ORTHO05D003545 4.0e-06 57.0 43 60.5
Cfa025927 Carpinus fangiana HOM05D003078 ORTHO05D003545 6.9e-06 56.2 43 58.1


User provided reference genes

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