Gene: Sopen06g009940

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g009940
  • Transcript Identifier Sopen06g009940.2
  • Gene Type Coding gene
  • Location Spenn-ch06 : 25372138-25383314 : positive

Gene Family Information

  • ID HOM05D003078
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g009940.2

Descriptions

  • Description Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum. | long chain base2 (LCB2) | CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII , Pyridoxal phosphate-dependent transferase, major domain , Aminotransferase, class-II, pyridoxal-phosphate binding site , Pyridoxal phosphate-dependent transferase, major region, subdomain 1 | BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009058
IEA
InterProbiosynthetic process
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT3G48780
GO:0046512
ISO
PLAZA Integrative Orthologysphingosine biosynthetic process AT5G23670
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G48780
GO:0043067
ISO
PLAZA Integrative Orthologyregulation of programmed cell death AT5G23670
GO:0030148
ISO
PLAZA Integrative Orthologysphingolipid biosynthetic process AT3G48780

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G23670
GO:0004758
ISO
PLAZA Integrative Orthologyserine C-palmitoyltransferase activity AT3G48780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
ISO
PLAZA Integrative Orthologymembrane AT5G23670
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT5G23670
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT5G23670

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR004839 Aminotransferase, class I/classII
Mapman id Description
5.4.1.2 Lipid metabolism.sphingolipid biosynthesis.serine C-palmitoyltransferase complex.catalytic subunit LCB2