Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 0.0e+00 1229.9 655 100.0
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.2e-105 388.3 737 39.8
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.9e-103 380.9 714 39.1
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 7.5e-100 369.0 729 37.9
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.7e-99 367.9 731 38.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.8e-98 364.4 755 38.5
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 2.0e-97 360.9 718 37.6
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.9e-97 359.4 727 38.0
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 5.9e-97 359.4 720 39.3
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 7.8e-97 359.0 713 38.6
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 7.8e-97 359.0 727 37.7
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.7e-96 357.8 711 38.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 6.6e-96 355.9 722 38.5
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 8.6e-96 355.5 717 38.1
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.1e-95 355.1 719 37.3
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.1e-95 355.1 727 37.7
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 2.5e-95 354.0 721 37.7
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.5e-95 354.0 540 42.2
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.3e-95 353.6 715 37.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 4.3e-95 353.2 726 36.8
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.3e-95 353.2 736 37.6
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 5.6e-95 352.8 730 37.1
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-94 351.7 717 37.1
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.6e-94 351.3 725 36.6
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.6e-94 351.3 725 37.5
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.6e-94 351.3 715 36.6
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.1e-94 350.9 725 37.0
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.1e-94 350.9 723 37.8
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.8e-94 350.5 708 38.8
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.8e-94 350.5 723 37.2
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 4.7e-94 349.7 714 37.3
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.7e-94 349.7 569 41.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.2e-94 349.4 716 35.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.0e-94 349.0 728 36.5
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 8.0e-94 349.0 711 36.3
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.0e-94 349.0 716 36.9
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.0e-93 348.6 717 37.0
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.4e-93 348.2 762 37.8
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.3e-93 347.4 707 37.2
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.0e-93 346.7 733 36.7
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.0e-93 346.7 468 45.9
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.2e-93 346.3 715 37.5
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 6.8e-93 345.9 721 36.1
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.8e-93 345.9 723 37.8
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 1.2e-92 345.1 717 37.5
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.2e-92 345.1 726 37.5
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.5e-92 344.7 717 37.9
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.5e-92 344.7 714 37.4
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.5e-92 344.7 717 37.9
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.5e-92 344.7 711 36.4
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.0e-92 344.4 708 37.7
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.6e-92 344.0 731 37.2
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 3.4e-92 343.6 717 37.2
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.4e-92 343.6 731 37.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 3.4e-92 343.6 725 36.8
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 4.4e-92 343.2 727 36.6
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 4.4e-92 343.2 712 37.2
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 5.8e-92 342.8 722 37.5
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 5.8e-92 342.8 727 37.4
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 7.5e-92 342.4 717 36.5
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 9.8e-92 342.0 726 36.4
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.7e-91 341.3 707 37.3
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.7e-91 341.3 728 36.7
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.2e-91 340.9 720 37.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.2e-91 340.9 725 36.0
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 2.9e-91 340.5 707 36.6
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 3.7e-91 340.1 725 37.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 6.4e-91 339.3 733 35.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.3e-91 339.0 723 36.1
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 8.3e-91 339.0 722 37.8
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 8.3e-91 339.0 726 36.0
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.1e-90 338.6 476 45.0
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.1e-90 338.6 736 36.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.1e-90 338.6 721 38.0
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.4e-90 338.2 539 40.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.4e-90 338.2 718 36.1
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.4e-90 338.2 468 45.9
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 3.2e-90 337.0 719 35.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.2e-90 337.0 724 36.6
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.4e-90 336.3 727 35.5
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 7.0e-90 335.9 742 36.4
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 7.0e-90 335.9 457 44.9
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 9.2e-90 335.5 543 40.5
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.2e-90 335.5 746 35.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 9.2e-90 335.5 713 35.6
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 9.2e-90 335.5 525 41.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.6e-89 334.7 741 35.4
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 2.0e-89 334.3 729 36.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 6.0e-89 332.8 722 35.7
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.0e-89 332.8 504 44.6
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.0e-88 332.0 737 35.7
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.0e-88 332.0 471 44.6
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.0e-88 332.0 715 37.3
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.0e-88 332.0 723 36.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.3e-88 331.6 711 37.0
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.3e-88 331.6 728 36.4
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 3.0e-88 330.5 721 36.1
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.0e-88 329.7 714 37.0
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 6.6e-88 329.3 715 36.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 8.6e-88 328.9 731 36.8
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.1e-87 328.6 731 37.1
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.3e-87 326.6 505 42.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.6e-87 326.2 730 36.3
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 7.3e-87 325.9 679 36.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.3e-87 325.9 736 36.3
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 1.2e-86 325.1 717 35.8
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.1e-86 324.3 741 35.6
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.8e-86 323.9 736 35.6
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 4.7e-86 323.2 720 35.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.7e-86 323.2 722 35.6
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 2.3e-85 320.9 736 35.7
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.8e-85 319.3 725 34.9
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 6.8e-85 319.3 722 35.6
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-84 317.8 386 47.4
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-84 317.8 386 47.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.6e-84 317.4 395 47.1
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.7e-83 313.5 726 34.6
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.1e-82 312.0 731 34.7
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.4e-82 311.6 720 34.2
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 3.2e-82 310.5 685 37.1
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.1e-82 309.3 734 35.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.2e-82 308.9 731 34.7
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 2.1e-81 307.8 484 43.8
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 2.7e-81 307.4 753 34.4
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 7.8e-81 305.8 706 34.4
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.6e-80 302.4 710 34.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 7.3e-79 299.3 460 42.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 3.6e-78 297.0 725 34.9
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.1e-77 293.9 385 45.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.8e-75 287.0 734 34.2
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 8.4e-75 285.8 884 30.9
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.6e-73 281.6 338 47.6
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.0e-69 266.9 333 46.2
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 6.9e-69 266.2 657 35.6
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 4.9e-59 233.4 600 34.5
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-55 222.2 565 33.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.2e-49 202.2 460 36.3
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.0e-43 182.6 265 44.5
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.8e-38 164.5 218 44.0
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.4e-36 157.5 150 54.0
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.3e-31 141.0 152 48.0
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.2e-30 136.3 353 31.7
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 2.9e-27 127.9 465 28.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 5.0e-27 127.1 398 30.2
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.9e-24 117.5 332 31.3
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 1.4e-21 109.0 402 31.3
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 9.1e-21 106.3 388 28.4
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-19 102.4 123 47.2
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 6.5e-19 100.1 366 29.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 1.1e-15 89.4 69 59.4
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.4e-15 87.4 69 59.4
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.7e-14 85.5 174 36.8
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 3.7e-14 84.3 404 26.0
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 6.3e-14 83.6 394 26.9
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 4.1e-13 80.9 81 45.7
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.5e-12 77.8 62 58.1
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 9.4e-10 69.7 396 25.5
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.1e-09 67.0 77 44.2
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.0e-08 64.7 59 54.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 2.6e-07 61.6 59 52.5
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.5e-07 60.1 58 51.7
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.3e-06 57.0 299 27.4


User provided reference genes

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