Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 0.0e+00 1326.6 658 100.0
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 0.0e+00 1295.0 659 97.9
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 0.0e+00 1225.3 659 93.9
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 0.0e+00 1118.6 671 87.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-292 1009.6 650 80.3
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-262 909.4 558 84.6
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.1e-255 884.8 602 79.2
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-241 840.1 562 80.8
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-241 839.3 688 67.9
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-228 795.0 479 84.1
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.1e-213 745.0 469 83.6
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 5.3e-186 655.2 745 48.3
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 5.3e-178 628.6 771 44.7
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.3e-172 609.0 791 43.7
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.5e-169 600.5 722 45.3
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.7e-168 597.0 716 45.5
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.5e-168 595.1 724 44.9
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 6.5e-168 595.1 714 45.8
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 8.4e-168 594.7 716 45.5
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.1e-167 594.3 710 45.5
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.4e-167 594.0 719 45.2
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.5e-167 593.2 723 46.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.3e-165 586.6 720 44.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.0e-165 586.3 725 44.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.9e-165 585.9 717 44.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 5.1e-165 585.5 719 44.9
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 6.7e-165 585.1 714 44.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 6.7e-165 585.1 715 44.5
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.9e-164 583.6 720 43.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.3e-164 582.8 710 44.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 7.4e-164 581.6 719 45.1
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 7.4e-164 581.6 720 43.9
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.3e-163 580.9 708 45.1
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.3e-163 580.9 717 45.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.6e-163 580.5 715 45.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.8e-163 579.7 713 44.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.7e-163 579.3 717 44.8
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 4.8e-163 578.9 714 45.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.8e-163 578.9 716 45.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 6.3e-163 578.6 717 45.0
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.1e-162 577.8 713 44.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.4e-162 577.4 712 44.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.3e-162 575.5 680 45.4
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.5e-161 573.9 719 44.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.0e-161 573.5 724 44.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 2.6e-161 573.2 717 44.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.4e-161 572.8 714 45.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.4e-161 572.8 713 44.5
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.5e-161 572.4 748 43.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 5.9e-161 572.0 721 44.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 7.7e-161 571.6 713 44.7
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 7.7e-161 571.6 774 43.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.0e-160 571.2 714 45.2
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.0e-160 571.2 719 44.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 3.8e-160 569.3 711 43.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-159 567.4 683 46.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.9e-159 567.0 712 43.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.1e-158 563.5 727 45.1
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 6.1e-158 562.0 726 44.8
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 2.3e-157 560.1 761 42.6
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.3e-157 560.1 748 43.3
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.5e-156 557.4 712 44.0
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 4.3e-156 555.8 711 43.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.3e-156 555.8 723 44.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 5.7e-156 555.4 724 44.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.7e-155 553.9 798 40.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.2e-155 553.5 711 44.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.7e-155 552.7 722 42.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.1e-154 549.7 713 44.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 5.3e-154 548.9 725 44.1
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.9e-154 548.5 721 44.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 9.1e-154 548.1 673 44.6
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.4e-153 546.2 692 44.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 4.5e-153 545.8 724 43.5
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 5.9e-153 545.4 716 42.6
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 5.9e-153 545.4 721 44.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.3e-152 544.3 724 43.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.7e-152 543.9 714 43.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 8.5e-152 541.6 713 43.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.1e-151 541.2 740 42.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-151 540.8 721 42.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.4e-151 540.8 727 42.0
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 7.2e-151 538.5 706 43.3
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.7e-150 536.6 715 43.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 3.6e-150 536.2 740 41.6
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.4e-149 534.3 658 45.9
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.0e-149 533.1 731 42.1
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.5e-148 530.8 767 41.9
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.3e-148 529.6 602 48.0
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.1e-146 523.1 678 44.0
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.1e-146 521.5 715 43.2
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.2e-145 521.2 719 43.0
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.9e-145 518.8 742 41.0
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.9e-144 516.5 738 43.0
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.3e-141 506.9 573 47.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 7.5e-140 501.9 698 43.0
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 6.3e-139 498.8 742 39.8
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.8e-136 489.6 459 53.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 3.2e-135 486.5 739 40.5
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 6.1e-134 482.3 678 41.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-129 467.2 713 41.1
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.7e-129 466.8 511 48.7
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 5.0e-128 462.6 556 46.9
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.9e-127 460.7 689 39.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 5.2e-125 452.6 436 53.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 5.6e-119 432.6 582 43.1
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 8.0e-118 428.7 471 49.3
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-117 427.2 369 67.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 5.7e-116 422.5 565 42.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 7.3e-103 379.0 312 59.6
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.9e-95 354.4 718 34.0
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.5e-92 344.7 274 62.4
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.0e-92 344.4 398 47.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-92 343.6 193 86.5
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-85 321.6 162 95.7
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 9.9e-84 315.5 494 38.1
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.2e-82 310.5 360 47.5
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 4.8e-78 296.6 451 39.9
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 4.8e-78 296.6 451 39.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-76 292.0 496 37.9
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.2e-73 282.0 276 51.1
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 3.3e-71 273.9 348 44.5
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.9e-67 260.8 294 48.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.0e-48 199.1 331 37.2
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.1e-45 187.6 364 35.4
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.2e-44 185.7 160 55.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.1e-42 179.1 676 28.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 3.0e-40 171.0 268 39.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 6.9e-37 159.8 110 69.1
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.5e-35 153.3 81 95.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 8.5e-35 152.9 393 29.3
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.9e-34 151.8 104 65.4
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.7e-33 147.9 139 51.8
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.0e-32 144.4 165 49.7
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 4.5e-28 130.6 221 38.9
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.2e-26 124.4 107 57.9
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 8.0e-25 119.8 221 35.3
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.3e-24 118.2 185 35.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 5.0e-19 100.5 168 35.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 6.5e-19 100.1 165 33.9
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.6e-17 95.5 87 51.7
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 3.6e-17 94.4 84 58.3
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.8e-16 92.0 131 38.9
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.4e-15 87.4 56 80.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-13 82.4 161 35.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.1e-13 80.9 83 45.8
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 5.0e-11 73.9 155 25.8
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-10 72.0 79 60.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 4.7e-09 67.4 70 47.1
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.4e-08 65.9 80 58.8
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.0e-07 62.0 73 42.5
Rhsim04G0113800 Rhododendron simsii HOM05D000515 ORTHO05D005511 5.7e-07 60.5 64 42.2
vmacro08997 Vaccinium macrocarpon HOM05D000515 ORTHO05D005511 7.5e-07 60.1 64 42.2
MD00G1159900 Malus domestica HOM05D000515 ORTHO05D005511 2.2e-06 58.5 64 42.2


User provided reference genes

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