Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.0e-85 320.5 217 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.2e-33 147.5 137 56.2
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.5e-33 145.6 136 54.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.6e-33 144.8 136 53.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.7e-32 143.7 122 57.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-28 131.0 136 48.5
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.1e-28 131.0 129 52.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.9e-28 130.2 137 48.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.6e-27 127.1 121 54.5
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.8e-27 126.3 135 48.9
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.8e-27 126.3 121 54.5
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 4.8e-27 125.6 122 50.0
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.2e-27 124.8 136 47.1
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.2e-27 124.8 129 48.8
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 8.2e-27 124.8 131 50.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 8.2e-27 124.8 131 51.1
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 8.2e-27 124.8 122 49.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.1e-26 124.4 135 48.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-26 124.0 122 52.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.8e-26 123.6 132 50.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.8e-26 123.6 124 51.6
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.4e-26 123.2 136 47.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.4e-26 123.2 129 47.3
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.4e-26 123.2 129 48.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.4e-26 123.2 129 48.1
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-26 123.2 136 49.3
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.4e-26 123.2 122 50.8
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.1e-26 122.9 129 49.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.1e-26 122.9 134 49.3
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 4.1e-26 122.5 122 51.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 4.1e-26 122.5 138 48.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.3e-26 122.1 122 48.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 5.3e-26 122.1 127 51.2
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 6.9e-26 121.7 125 48.8
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 6.9e-26 121.7 136 46.3
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 6.9e-26 121.7 122 50.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.9e-26 121.7 123 49.6
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.9e-26 121.7 123 48.0
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 9.0e-26 121.3 122 48.4
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 9.0e-26 121.3 123 50.4
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.0e-26 121.3 129 48.1
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 9.0e-26 121.3 146 47.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-25 120.9 122 47.5
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.5e-25 120.6 124 50.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-25 120.6 123 46.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.0e-25 120.2 122 51.6
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.0e-25 120.2 123 48.8
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.0e-25 120.2 123 48.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.0e-25 120.2 135 45.9
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.6e-25 119.8 136 44.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.6e-25 119.8 122 49.2
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.6e-25 119.8 131 46.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.4e-25 119.4 122 50.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 3.4e-25 119.4 125 48.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.5e-25 119.0 122 48.4
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 5.9e-25 118.6 122 48.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.9e-25 118.6 123 48.8
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 7.6e-25 118.2 124 48.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.3e-24 117.5 122 47.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.3e-24 117.5 123 48.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.7e-24 117.1 122 47.5
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.7e-24 117.1 131 46.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-24 117.1 122 48.4
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-24 117.1 122 48.4
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.7e-24 117.1 122 48.4
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-24 117.1 121 51.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.7e-24 117.1 122 49.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.7e-24 117.1 121 48.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.7e-24 117.1 138 46.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.2e-24 116.7 122 47.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 2.9e-24 116.3 122 47.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.9e-24 116.3 122 49.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.8e-24 115.9 126 47.6
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-24 115.9 123 49.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.8e-24 115.9 123 49.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.8e-24 115.9 123 49.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 5.0e-24 115.5 123 47.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 5.0e-24 115.5 122 48.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 6.5e-24 115.2 129 44.2
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.5e-24 115.2 123 47.2
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 6.5e-24 115.2 122 49.2
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.5e-24 115.2 122 46.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 8.5e-24 114.8 122 50.8
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 8.5e-24 114.8 126 48.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.1e-23 114.4 122 48.4
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.4e-23 114.0 121 47.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.9e-23 113.6 127 45.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.9e-23 113.6 122 48.4
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 3.2e-23 112.8 123 48.8
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 4.2e-23 112.5 133 46.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.2e-23 112.5 122 49.2
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 5.5e-23 112.1 132 48.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.2e-23 111.7 131 44.3
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.2e-23 111.7 117 49.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 7.2e-23 111.7 126 45.2
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 9.3e-23 111.3 145 41.4
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.3e-23 111.3 127 47.2
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 9.3e-23 111.3 128 46.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-22 110.5 129 45.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.1e-22 110.2 169 39.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.1e-22 110.2 126 47.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.7e-22 109.8 117 47.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.6e-22 109.4 117 47.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 6.1e-22 108.6 133 47.4
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-21 107.8 126 45.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.3e-21 107.5 83 56.6
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-21 106.7 124 44.4
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.9e-21 105.9 131 44.3
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.1e-21 105.5 122 45.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.1e-21 105.5 136 40.4
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.5e-20 104.0 126 46.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.9e-20 103.6 129 47.3
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-20 103.6 125 45.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 5.7e-20 102.1 124 41.9
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.2e-19 100.1 122 44.3
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 8.2e-19 98.2 96 51.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.8e-18 97.1 138 41.3
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-18 95.9 115 42.6
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 9.1e-18 94.7 149 38.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.5e-17 94.0 138 41.3
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 5.9e-17 92.0 115 41.7
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-16 90.9 131 39.7
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.8e-16 89.4 93 47.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 8.5e-16 88.2 136 40.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.9e-15 87.0 120 40.8
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.5e-15 85.5 121 39.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 6.1e-14 82.0 108 43.5
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.4e-13 80.9 127 36.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.5e-12 77.4 118 37.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.7e-12 75.5 121 36.4
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.7e-12 74.7 97 45.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 9.7e-12 74.7 140 37.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-11 74.3 143 38.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-10 70.5 100 39.0
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-08 63.5 73 45.2
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-08 62.8 92 40.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.1e-07 61.2 187 26.7
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.6e-06 57.4 70 38.6


User provided reference genes

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