Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.5e-54 214.2 95 100.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.0e-14 82.4 104 40.4
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 2.0e-14 82.4 104 40.4
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 2.0e-14 82.4 104 40.4
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 2.0e-14 82.4 104 40.4
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 2.0e-14 82.4 104 40.4
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.5e-14 81.3 104 39.4
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 5.9e-14 80.9 104 40.4
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 7.7e-14 80.5 105 41.9
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.0e-13 80.1 104 40.4
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.3e-13 79.7 105 40.0
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.3e-13 79.7 104 41.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.7e-13 79.3 105 41.9
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.7e-13 79.3 104 40.4
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.7e-13 79.3 104 40.4
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 40.4
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 40.4
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 40.4
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 40.4
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 40.4
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 38.5
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.3e-13 79.0 104 39.4
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 41.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 41.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 41.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 41.0
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.9e-13 78.6 104 40.4
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 40.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.9e-13 78.6 104 40.4
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 41.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 40.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.9e-13 78.6 105 40.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.8e-13 78.2 104 39.4
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.8e-13 78.2 104 41.3
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.8e-13 78.2 105 41.0
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.8e-13 78.2 104 39.4
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.8e-13 78.2 104 37.5
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 5.0e-13 77.8 104 40.4
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.0e-13 77.8 105 41.0
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 5.0e-13 77.8 105 41.0
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 5.0e-13 77.8 105 39.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 5.0e-13 77.8 104 39.4
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 5.0e-13 77.8 104 40.4
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 5.0e-13 77.8 104 40.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 41.0
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 41.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 41.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 41.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 41.0
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 6.5e-13 77.4 105 39.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 8.6e-13 77.0 104 41.3
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 8.6e-13 77.0 104 40.4
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.6e-13 77.0 104 37.5
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 8.6e-13 77.0 104 38.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 39.4
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 40.4
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 40.4
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 38.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 40.4
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.1e-12 76.6 104 38.5
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.5e-12 76.3 104 40.4
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.5e-12 76.3 104 36.5
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.5e-12 76.3 104 40.4
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.5e-12 76.3 104 36.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.5e-12 76.3 104 39.4
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.9e-12 75.9 104 39.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.9e-12 75.9 104 38.5
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.9e-12 75.9 104 35.6
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.9e-12 75.9 104 39.4
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.5e-12 75.5 105 37.1
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.5e-12 75.5 104 39.4
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 3.2e-12 75.1 104 39.4
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.2e-12 75.1 104 38.5
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.2e-12 75.1 104 39.4
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 3.2e-12 75.1 104 39.4
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.2e-12 75.1 104 37.5
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 4.2e-12 74.7 104 37.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 4.2e-12 74.7 104 38.5
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.2e-12 74.7 122 33.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.2e-12 74.7 103 35.9
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 4.2e-12 74.7 104 38.5
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 4.2e-12 74.7 104 37.5
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 5.5e-12 74.3 104 37.5
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 5.5e-12 74.3 105 37.1
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 5.5e-12 74.3 104 38.5
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 5.5e-12 74.3 105 39.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.5e-12 74.3 104 38.5
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 5.5e-12 74.3 104 36.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 5.5e-12 74.3 104 38.5
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 7.2e-12 73.9 104 39.4
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 7.2e-12 73.9 104 39.4
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 7.2e-12 73.9 105 37.1
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 7.2e-12 73.9 105 38.1
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 37.5
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 37.5
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 37.5
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 39.4
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 39.4
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 9.5e-12 73.6 123 34.1
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 9.5e-12 73.6 104 36.5
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.2e-11 73.2 104 39.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.6e-11 72.8 104 38.5
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 2.1e-11 72.4 104 38.5
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.8e-11 72.0 103 35.9
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.8e-11 72.0 104 36.5
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 8.0e-11 70.5 104 38.5
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.0e-11 70.5 104 38.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.4e-10 69.7 112 36.6
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.3e-10 68.9 104 37.5
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.0e-10 68.2 105 35.2
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.0e-10 68.2 105 35.2
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.0e-10 68.2 105 35.2
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.2e-09 66.6 119 31.9
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 2.0e-09 65.9 105 36.2
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.4e-09 64.7 105 34.3
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.7e-08 62.8 96 35.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 4.9e-08 61.2 83 38.6
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 8.3e-08 60.5 84 39.3
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.8e-07 59.3 102 34.3
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 9.2e-07 57.0 99 32.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.2e-06 56.6 101 32.7
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 7.8e-06 53.9 78 38.5


User provided reference genes

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