Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 7.6e-95 350.5 180 100.0
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 8.2e-73 277.3 185 81.6
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.7e-57 226.5 175 66.3
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.4e-56 222.6 188 63.3
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.1e-56 222.2 175 64.6
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 5.3e-56 221.5 187 63.1
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.2e-55 220.3 175 64.6
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.2e-55 220.3 185 62.7
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.4e-55 218.8 184 60.3
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.4e-55 218.8 174 62.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 4.5e-55 218.4 175 64.6
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 5.9e-55 218.0 175 63.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 5.9e-55 218.0 175 63.4
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.3e-54 216.9 185 61.1
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.3e-54 216.9 175 64.6
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.7e-54 216.5 175 63.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.2e-54 216.1 174 62.6
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.9e-54 215.7 175 63.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.9e-54 215.7 174 61.5
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.8e-54 215.3 175 62.9
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.8e-54 215.3 175 62.9
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.8e-54 215.3 185 60.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 5.0e-54 214.9 175 63.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 5.0e-54 214.9 175 64.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.0e-54 214.9 175 64.0
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.0e-54 214.9 175 63.4
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.0e-54 214.9 175 64.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 6.5e-54 214.5 174 63.8
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 6.5e-54 214.5 174 63.8
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 6.5e-54 214.5 184 62.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.1e-53 213.8 175 62.3
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.1e-53 213.8 175 64.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.1e-53 213.8 175 63.4
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.1e-53 213.8 175 62.9
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.4e-53 213.4 175 63.4
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.5e-53 212.6 178 64.6
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 3.2e-53 212.2 176 62.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 4.2e-53 211.8 175 61.7
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 4.2e-53 211.8 175 61.7
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.2e-53 211.8 185 61.6
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 4.2e-53 211.8 181 60.2
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 5.5e-53 211.5 175 62.9
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 5.5e-53 211.5 174 62.6
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.2e-53 211.1 175 61.1
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 7.2e-53 211.1 175 62.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 9.4e-53 210.7 175 61.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 9.4e-53 210.7 175 61.7
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.4e-53 210.7 175 61.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.2e-52 210.3 174 63.2
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.2e-52 210.3 178 62.9
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-52 209.9 182 59.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.6e-52 209.9 174 63.2
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.1e-52 209.5 174 62.6
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.1e-52 209.5 184 58.2
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.1e-52 209.5 184 58.2
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 2.7e-52 209.1 175 62.3
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.7e-52 209.1 175 60.6
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.7e-52 209.1 174 62.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.6e-52 208.8 172 62.8
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.6e-52 208.8 175 62.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.7e-52 208.4 175 60.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.7e-52 208.4 175 62.9
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 4.7e-52 208.4 175 61.7
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.7e-52 208.4 175 60.6
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 6.1e-52 208.0 182 59.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 6.1e-52 208.0 175 62.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 7.9e-52 207.6 174 62.6
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 7.9e-52 207.6 175 60.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.4e-51 206.8 182 58.8
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.4e-51 206.8 174 62.6
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.4e-51 206.8 175 61.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.4e-51 206.8 175 61.7
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.8e-51 206.5 178 62.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.8e-51 206.5 172 62.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.8e-51 206.5 175 60.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.8e-51 206.5 175 60.0
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.8e-51 206.5 175 60.0
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.8e-51 206.5 175 60.0
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.3e-51 206.1 178 63.5
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.3e-51 206.1 175 62.3
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.3e-51 206.1 175 60.0
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.0e-51 205.7 182 59.3
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 3.0e-51 205.7 182 58.8
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.9e-51 205.3 182 59.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.9e-51 205.3 182 59.9
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.9e-51 205.3 178 62.9
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.9e-51 205.3 175 62.3
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 5.2e-51 204.9 182 59.9
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 5.2e-51 204.9 182 59.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 5.2e-51 204.9 182 59.9
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 5.2e-51 204.9 175 60.0
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 6.7e-51 204.5 184 59.8
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.1e-50 203.8 174 60.9
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.5e-50 203.4 175 61.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.0e-50 203.0 175 60.0
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.0e-50 203.0 185 57.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.6e-50 202.6 175 59.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.6e-50 202.6 179 58.7
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.6e-50 202.6 175 58.3
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 2.6e-50 202.6 175 57.7
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 9.7e-50 200.7 175 59.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.3e-49 200.3 172 58.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.2e-49 199.5 174 60.3
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.8e-49 199.1 175 56.6
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.8e-49 199.1 175 56.6
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.8e-49 199.1 175 56.6
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 3.7e-49 198.7 172 60.5
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 6.3e-49 198.0 178 59.6
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 6.3e-49 198.0 172 60.5
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 8.2e-49 197.6 178 57.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-48 197.2 175 56.0
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.8e-48 196.4 175 56.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.4e-48 196.1 175 57.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-47 193.7 178 56.7
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 2.6e-47 192.6 173 57.2
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 3.5e-47 192.2 177 58.8
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 2.2e-46 189.5 164 57.9
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.9e-45 186.4 219 48.9
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.9e-45 186.4 173 56.6
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 3.2e-45 185.7 211 48.3
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.2e-45 185.3 178 57.3
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.6e-44 183.3 127 68.5
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 6.1e-44 181.4 127 65.4
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 6.1e-44 181.4 175 53.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 8.0e-44 181.0 158 58.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.7e-42 174.9 158 58.2
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 9.7e-42 174.1 169 56.2
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.7e-41 173.3 169 56.8
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.7e-41 173.3 170 55.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.7e-41 172.2 154 57.1
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.8e-40 169.9 127 64.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.4e-40 169.5 176 55.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 2.5e-37 159.5 169 53.3
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.7e-36 156.0 175 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 6.1e-36 154.8 136 58.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.0e-34 149.8 135 60.0
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.8e-33 146.0 90 74.4
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.3e-33 144.8 90 72.2
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.1e-32 144.1 89 70.8
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-32 142.5 89 75.3
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.0e-31 139.8 90 67.8
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 5.9e-31 138.3 192 44.8
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.7e-30 136.7 151 49.7
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-30 136.7 88 70.5
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 8.6e-30 134.4 152 48.7
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.7e-28 128.6 137 54.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.4e-26 122.5 94 62.8
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.7e-26 121.7 165 47.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.8e-24 116.7 175 42.3
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.2e-23 114.0 99 60.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 2.9e-22 109.4 66 77.3
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 8.9e-19 97.8 106 50.0
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.4e-16 89.7 64 60.9
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 9.2e-16 87.8 112 49.1
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 4.3e-13 79.0 99 44.4
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 3.6e-12 75.9 78 55.1
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.1e-11 72.8 52 61.5
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.2e-11 72.0 79 53.2
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-06 57.8 113 38.9


User provided reference genes

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