Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.1e-251 873.2 606 100.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 2.5e-81 307.4 379 52.5
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 9.4e-81 305.4 390 50.8
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 4.7e-80 303.1 389 50.1
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.0e-79 302.0 406 49.0
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.8e-79 301.2 389 50.4
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 4.0e-79 300.1 387 49.6
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.2e-79 299.7 355 51.8
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.2e-78 298.5 383 50.1
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.6e-78 297.4 365 51.8
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 4.4e-78 296.6 390 49.5
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.2e-77 294.3 373 49.6
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 3.1e-76 290.4 387 47.5
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.1e-76 290.0 389 48.8
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 4.1e-76 290.0 382 47.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 7.0e-76 289.3 380 48.7
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 9.1e-76 288.9 397 47.4
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.6e-75 288.1 385 48.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 5.9e-75 286.2 381 48.3
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 5.9e-75 286.2 372 50.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.0e-74 285.4 348 50.3
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.3e-74 285.0 388 48.2
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.3e-74 285.0 367 49.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 3.8e-74 283.5 378 48.4
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.8e-74 283.5 365 51.5
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.8e-74 283.5 388 49.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 6.5e-74 282.7 348 49.7
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.5e-74 282.7 378 48.4
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 8.5e-74 282.3 391 46.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.1e-73 282.0 372 49.5
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.9e-73 281.2 390 47.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.9e-73 281.2 385 46.5
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.5e-73 280.8 477 45.5
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.5e-73 280.8 378 48.1
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 4.2e-73 280.0 326 53.7
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 4.2e-73 280.0 407 46.2
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 4.2e-73 280.0 386 49.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 4.2e-73 280.0 386 46.9
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.2e-73 280.0 398 48.2
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 4.2e-73 280.0 361 49.0
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 5.5e-73 279.6 385 47.3
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 7.2e-73 279.3 381 48.6
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 9.5e-73 278.9 385 45.7
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 9.5e-73 278.9 385 46.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 9.5e-73 278.9 383 47.3
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.2e-72 278.5 353 49.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.2e-72 278.5 393 48.3
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.2e-72 278.5 381 45.9
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.6e-72 278.1 353 49.6
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.6e-72 278.1 376 47.1
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-72 278.1 381 47.5
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.1e-72 277.7 348 49.4
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.7e-72 277.3 387 48.1
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.6e-72 276.9 384 47.1
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 4.7e-72 276.6 396 45.7
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 8.0e-72 275.8 352 48.9
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.8e-71 274.6 367 47.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.0e-71 273.9 387 47.5
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 4.0e-71 273.5 388 47.2
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 4.0e-71 273.5 376 50.0
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.2e-71 273.1 385 46.8
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 5.2e-71 273.1 392 46.9
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 6.8e-71 272.7 378 46.3
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 8.8e-71 272.3 382 46.3
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.2e-70 271.9 389 45.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.5e-70 271.6 387 46.5
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.0e-70 271.2 372 48.1
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.4e-70 270.4 382 46.1
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 3.4e-70 270.4 370 45.9
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 4.4e-70 270.0 382 45.5
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.3e-69 268.5 393 46.8
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.3e-69 268.5 370 46.5
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.7e-69 268.1 376 48.1
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.8e-69 267.3 367 46.6
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.8e-69 267.3 353 47.9
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 3.7e-69 266.9 397 44.1
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.9e-69 266.5 361 47.6
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 4.9e-69 266.5 384 44.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 6.3e-69 266.2 388 46.4
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 6.3e-69 266.2 486 43.2
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 8.3e-69 265.8 242 58.7
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 5.4e-68 263.1 385 44.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 9.2e-68 262.3 473 40.6
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 1.6e-67 261.5 408 43.6
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 2.7e-67 260.8 393 44.5
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 3.5e-67 260.4 473 39.7
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.3e-66 257.7 456 45.4
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.3e-66 257.7 390 45.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.5e-65 255.0 432 41.9
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.9e-65 254.6 394 45.9
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.5e-65 254.2 320 49.1
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 3.3e-65 253.8 378 46.0
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 7.3e-65 252.7 387 45.5
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 9.5e-65 252.3 394 43.4
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 6.1e-64 249.6 390 44.6
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.4e-63 248.4 378 45.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.8e-63 248.1 388 44.8
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 5.2e-63 246.5 379 44.3
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 2.0e-62 244.6 390 43.8
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 2.0e-62 244.6 373 43.7
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.6e-62 244.2 391 43.5
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.4e-62 243.8 387 43.4
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.4e-62 243.8 387 43.4
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 7.5e-62 242.7 402 42.8
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 3.7e-61 240.4 384 42.4
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 3.7e-61 240.4 402 42.5
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 3.7e-61 240.4 377 43.0
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.1e-60 238.8 402 42.0
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.8e-60 238.0 364 44.2
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.3e-58 231.9 292 49.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 5.2e-55 219.9 394 42.1
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 6.8e-55 219.5 382 42.1
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.2e-54 218.8 366 40.4
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 3.7e-53 213.8 385 41.3
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 2.0e-51 208.0 468 36.3
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 4.6e-51 206.8 331 44.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.9e-45 187.6 213 53.5
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-43 182.2 285 40.4
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.3e-42 177.9 358 36.9
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 5.1e-42 176.8 324 38.6
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-36 157.5 163 49.1
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.4e-36 156.8 216 46.3
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.5e-35 154.1 216 45.4
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.5e-35 154.1 216 45.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.5e-35 154.1 216 45.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 2.4e-28 131.3 103 61.2
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 4.5e-22 110.5 283 33.2
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.4e-20 103.6 387 31.8
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 3.5e-19 100.9 157 39.5
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 3.0e-18 97.8 134 45.5
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.6e-16 92.0 165 44.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.1e-15 89.4 259 31.3
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.0e-14 85.1 177 37.9
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.2e-11 75.9 53 62.3
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 1.6e-11 75.5 98 42.9
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.6e-11 75.5 224 31.2
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-10 71.6 61 62.3


User provided reference genes

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