Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.1e-118 429.1 220 100.0
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 9.0e-74 280.8 156 91.0
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 4.2e-71 271.9 212 62.7
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 5.5e-71 271.6 210 64.3
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 7.2e-71 271.2 210 65.2
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 7.2e-71 271.2 210 65.2
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 9.3e-71 270.8 210 64.8
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.2e-70 270.4 210 63.3
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.2e-70 270.4 215 61.4
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 3.6e-70 268.9 210 63.3
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 4.6e-70 268.5 210 63.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 4.6e-70 268.5 210 63.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 4.6e-70 268.5 210 64.8
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 6.1e-70 268.1 210 63.3
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.0e-69 267.3 210 62.4
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.3e-69 266.2 210 62.9
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 3.0e-69 265.8 210 62.9
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 5.1e-69 265.0 210 61.0
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.1e-69 265.0 210 62.4
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 8.7e-69 264.2 210 62.9
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 8.7e-69 264.2 210 61.4
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.1e-68 263.8 210 61.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.1e-68 263.8 210 61.4
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.5e-68 263.5 211 63.0
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.5e-68 263.5 210 61.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.9e-68 263.1 210 62.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.9e-68 263.1 210 62.4
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.5e-68 262.7 218 59.2
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.5e-68 262.7 210 62.4
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 2.5e-68 262.7 210 60.5
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 3.3e-68 262.3 210 62.4
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 4.3e-68 261.9 210 61.0
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 5.7e-68 261.5 210 61.4
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 7.4e-68 261.2 210 61.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 9.7e-68 260.8 210 61.9
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 9.7e-68 260.8 210 60.0
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.3e-67 260.4 210 61.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.6e-67 260.0 210 61.9
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.7e-67 258.8 210 59.0
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 3.7e-67 258.8 202 62.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 6.3e-67 258.1 202 61.4
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.3e-67 258.1 201 61.7
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 6.3e-67 258.1 202 63.4
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 8.2e-67 257.7 210 59.5
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 8.2e-67 257.7 210 59.5
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.1e-66 257.3 210 60.5
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.1e-66 257.3 202 62.9
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.4e-66 256.9 210 60.5
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.4e-66 256.9 210 60.0
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.8e-66 256.5 210 60.0
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.8e-66 256.5 210 59.5
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.8e-66 256.5 210 59.0
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.1e-66 255.4 210 60.0
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.1e-66 255.4 210 60.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 5.3e-66 255.0 202 60.9
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 6.9e-66 254.6 210 58.6
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 60.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 9.0e-66 254.2 210 61.9
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 9.0e-66 254.2 212 56.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.2e-65 253.8 210 59.5
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.5e-65 253.4 210 59.0
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.5e-65 253.4 210 60.0
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.5e-65 253.4 205 61.0
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.5e-65 253.4 216 59.3
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.5e-65 253.4 210 60.0
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.5e-65 253.4 199 62.8
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.0e-65 253.1 210 58.6
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.0e-65 253.1 214 59.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.0e-65 253.1 210 59.0
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.4e-65 252.3 210 59.0
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 4.5e-65 251.9 202 59.9
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.5e-65 251.9 210 58.6
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.5e-65 251.9 210 59.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 5.9e-65 251.5 202 61.4
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.3e-64 250.4 210 60.0
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 1.3e-64 250.4 215 59.1
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.3e-64 250.4 210 60.0
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.7e-64 250.0 202 59.9
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-64 249.6 202 59.9
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.2e-64 249.6 202 59.9
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 2.9e-64 249.2 202 59.4
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.9e-64 249.2 210 58.6
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.9e-64 249.2 210 58.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 3.8e-64 248.8 212 60.8
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 5.0e-64 248.4 203 60.1
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 5.0e-64 248.4 203 60.1
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 6.5e-64 248.1 203 60.1
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 6.5e-64 248.1 203 60.1
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.5e-64 248.1 203 60.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 8.5e-64 247.7 203 60.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-62 243.8 217 55.3
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.1e-62 243.0 217 55.3
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 6.1e-62 241.5 196 62.8
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 7.9e-62 241.1 217 55.3
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.0e-61 240.7 210 58.1
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.0e-61 239.2 201 58.7
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 6.7e-61 238.0 199 58.8
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.8e-61 237.7 286 48.3
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.1e-60 237.3 198 58.1
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 2.0e-60 236.5 199 57.8
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.6e-60 236.1 199 57.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.3e-59 233.8 199 58.8
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 4.1e-58 228.8 211 53.1
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 5.3e-58 228.4 261 46.4
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.2e-57 227.3 203 55.7
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 4.5e-57 225.3 201 59.2
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 5.9e-57 224.9 202 55.0
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.3e-56 223.8 210 55.7
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.4e-53 213.8 165 65.5
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 5.2e-53 211.8 185 56.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 2.6e-52 209.5 173 60.7
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.4e-50 203.0 185 55.7
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 4.1e-50 202.2 164 59.8
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.1e-42 177.6 139 60.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.8e-42 176.8 145 60.7
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.2e-41 174.1 137 62.8
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.5e-41 172.6 137 62.8
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.9e-39 166.8 210 44.3
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 5.7e-36 155.2 170 49.4
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 9.8e-36 154.5 122 60.7
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.0e-33 146.7 152 49.3
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.7e-32 143.7 172 46.5
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 9.5e-31 137.9 110 58.2
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-29 134.0 210 38.1
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.8e-22 109.8 217 34.1
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-18 97.4 83 57.8
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 2.3e-16 90.1 85 55.3
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 8.3e-11 71.6 61 55.7
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 8.3e-11 71.6 56 57.1
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.0e-08 64.7 40 75.0
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.9e-08 62.8 46 60.9
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.5e-07 60.8 53 52.8
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 8.1e-06 55.1 58 55.2


User provided reference genes

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