Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO200G0011 Selaginella moellendorffii HOM05D001780 ORTHO05D376496 9.7e-106 386.7 183 100.0
SMO200G0022 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 2.9e-17 92.8 273 28.9
CBR_g17670 Chara braunii HOM05D001780 ORTHO05D004373 4.6e-15 85.5 250 28.8
Pp3c16_16950 Physcomitrium patens HOM05D001780 ORTHO05D004373 2.5e-13 79.7 304 25.7
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 2.5e-13 79.7 272 26.5
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 9.7e-13 77.8 304 25.7
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 9.7e-13 77.8 275 26.2
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 9.7e-13 77.8 272 27.2
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 9.7e-13 77.8 302 24.5
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 9.7e-13 77.8 272 26.5
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 9.7e-13 77.8 272 26.5
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.3e-12 77.4 267 27.0
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 2.2e-12 76.6 275 26.2
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 2.2e-12 76.6 300 25.7
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 2.2e-12 76.6 275 26.2
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 2.2e-12 76.6 304 25.7
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 2.8e-12 76.3 301 25.2
Carub.0003s2335 Capsella rubella HOM05D001780 ORTHO05D004373 3.7e-12 75.9 125 38.4
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 3.7e-12 75.9 272 26.8
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 3.7e-12 75.9 304 25.3
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 4.8e-12 75.5 273 26.0
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 4.8e-12 75.5 272 25.4
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 4.8e-12 75.5 272 25.7
Mapoly0045s0031 Marchantia polymorpha HOM05D001780 ORTHO05D004373 4.8e-12 75.5 275 26.2
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 4.8e-12 75.5 275 25.8
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 4.8e-12 75.5 302 26.2
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 6.3e-12 75.1 275 26.2
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 6.3e-12 75.1 275 26.2
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 6.3e-12 75.1 275 26.2
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.8
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.5
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.5
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.5
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.5
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 25.5
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 8.2e-12 74.7 275 26.2
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 8.2e-12 74.7 272 25.7
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 8.2e-12 74.7 302 25.2
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 1.1e-11 74.3 275 25.5
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 1.4e-11 73.9 275 25.8
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 1.4e-11 73.9 275 26.5
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 1.8e-11 73.6 275 25.1
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 1.8e-11 73.6 275 26.2
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 1.8e-11 73.6 275 25.8
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 2.4e-11 73.2 309 24.9
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 2.4e-11 73.2 275 26.2
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 2.4e-11 73.2 309 24.9
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 2.4e-11 73.2 309 24.9
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 3.1e-11 72.8 275 25.8
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 3.1e-11 72.8 275 25.8
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 3.1e-11 72.8 275 26.2
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 3.1e-11 72.8 275 25.1
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 4.1e-11 72.4 276 25.4
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 4.1e-11 72.4 275 25.5
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 4.1e-11 72.4 304 25.7
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 4.1e-11 72.4 309 25.2
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 4.1e-11 72.4 275 25.8
C07p51730 Brassica napus HOM05D001780 ORTHO05D004373 5.3e-11 72.0 126 36.5
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 5.3e-11 72.0 125 36.8
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 5.3e-11 72.0 275 24.7
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 5.3e-11 72.0 304 24.7
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 5.3e-11 72.0 275 25.5
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 5.3e-11 72.0 275 25.5
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 5.3e-11 72.0 275 25.8
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 5.3e-11 72.0 275 26.2
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 6.9e-11 71.6 125 37.6
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 6.9e-11 71.6 125 37.6
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 6.9e-11 71.6 275 25.1
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 6.9e-11 71.6 125 36.8
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 6.9e-11 71.6 275 25.5
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 6.9e-11 71.6 275 25.5
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 9.0e-11 71.2 125 37.6
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.0e-11 71.2 125 37.6
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.0e-11 71.2 125 37.6
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.0e-11 71.2 125 37.6
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.2e-10 70.9 304 24.3
SEGI_14552 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 1.5e-10 70.5 125 36.0
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 1.5e-10 70.5 309 24.6
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 2.0e-10 70.1 275 25.1
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 2.0e-10 70.1 125 36.8
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 2.6e-10 69.7 304 24.3
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 2.6e-10 69.7 125 36.8
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 3.4e-10 69.3 125 36.0
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.4e-10 69.3 275 25.5
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 3.4e-10 69.3 302 24.5
ATR0789G163 Amborella trichopoda HOM05D001780 ORTHO05D004373 4.5e-10 68.9 275 25.5
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 4.5e-10 68.9 125 35.2
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 4.5e-10 68.9 125 35.2
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 4.5e-10 68.9 125 35.2
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 4.5e-10 68.9 125 35.2
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 4.5e-10 68.9 272 26.5
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 4.5e-10 68.9 304 24.0
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 5.9e-10 68.6 125 35.2
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 5.9e-10 68.6 125 36.0
BcaNung00801 Brassica carinata HOM05D001780 ORTHO05D004373 7.7e-10 68.2 124 35.5
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 7.7e-10 68.2 125 36.0
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 1.0e-09 67.8 125 35.2
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 1.0e-09 67.8 125 36.0
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 1.3e-09 67.4 125 34.4
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 1.3e-09 67.4 125 36.8
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.3e-09 67.4 125 35.2
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 2.2e-09 66.6 125 34.4
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 2.2e-09 66.6 125 35.2
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 2.2e-09 66.6 125 35.2
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 2.2e-09 66.6 125 35.2
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 2.9e-09 66.2 125 35.2
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 2.9e-09 66.2 125 35.2
Potri.007G126501 Populus trichocarpa HOM05D001780 ORTHO05D004373 2.9e-09 66.2 236 26.3
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 3.8e-09 65.9 125 34.4
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 3.8e-09 65.9 125 34.4
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 5.0e-09 65.5 125 36.0
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 5.0e-09 65.5 125 36.0
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 5.0e-09 65.5 125 36.0
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 5.0e-09 65.5 125 35.2
SHI29174 Sapria himalayana HOM05D001780 ORTHO05D004373 6.5e-09 65.1 88 39.8
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 8.5e-09 64.7 125 34.4
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 8.5e-09 64.7 125 34.4
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 1.1e-08 64.3 125 35.2
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 1.4e-08 63.9 275 25.1
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 1.4e-08 63.9 86 43.0
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 1.4e-08 63.9 275 24.7
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 1.9e-08 63.5 125 34.4
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 1.9e-08 63.5 125 34.4
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 1.9e-08 63.5 125 34.4
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 2.5e-08 63.2 125 33.6
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 7.2e-08 61.6 125 35.2
Cre16.g651750 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 7.2e-08 61.6 274 23.7
AagrBONN_evm.TU.Sc2ySwM_368.2029 Anthoceros agrestis HOM05D001780 ORTHO05D004373 9.4e-08 61.2 230 24.8
PRCOL_00001024 Prasinoderma coloniale HOM05D001780 ORTHO05D004373 2.1e-07 60.1 125 33.6
SEGI_27348 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 6.1e-07 58.5 74 44.6
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.4e-06 57.4 86 36.0
SMO338G0005 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 2.3e-06 56.6 73 42.5
Dinv33217 Davidia involucrata HOM05D001780 ORTHO05D004373 3.9e-06 55.8 66 43.9
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 6.7e-06 55.1 66 43.9


User provided reference genes

Program Settings