Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO166G0045 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 2.8e-79 298.5 147 100.0
SMO115G0245 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 4.3e-64 248.1 124 99.2
SMO115G0143 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 2.1e-58 229.2 126 91.3
SMO115G0056 Selaginella moellendorffii HOM05D024012 ORTHO05D020869 1.1e-35 153.7 81 91.4
Mapoly0028s0058 Marchantia polymorpha HOM05D000567 ORTHO05D020869 5.4e-14 81.6 122 37.7
Pp3c11_23740 Physcomitrium patens HOM05D024145 ORTHO05D020869 5.9e-13 78.2 125 36.0
Duzib133G0668 Durio zibethinus HOM05D001604 ORTHO05D001432 3.6e-10 68.9 94 39.4
CSS0039244 Camellia sinensis var. sinensis HOM05D001604 ORTHO05D001432 1.0e-09 67.4 76 40.8
PSO170G2885 Papaver somniferum HOM05D001604 ORTHO05D001432 1.0e-09 67.4 76 39.5
PSO302G0086 Papaver somniferum HOM05D001604 ORTHO05D001432 1.0e-09 67.4 76 39.5
Thecc.01G280500 Theobroma cacao HOM05D001604 ORTHO05D001432 1.4e-09 67.0 94 39.4
Psat6g060480 Pisum sativum HOM05D001604 ORTHO05D001432 2.3e-09 66.2 93 38.7
Gohir.A08G185800 Gossypium hirsutum HOM05D001604 ORTHO05D001432 3.1e-09 65.9 76 40.8
Gohir.D08G203900 Gossypium hirsutum HOM05D001604 ORTHO05D001432 3.1e-09 65.9 76 40.8
Gorai.004G215900 Gossypium raimondii HOM05D001604 ORTHO05D001432 3.1e-09 65.9 76 40.8
Manes.01G208400 Manihot esculenta HOM05D001604 ORTHO05D001432 3.1e-09 65.9 76 40.8
Pp3c25_13850 Physcomitrium patens HOM05D024145 ORTHO05D022909 3.1e-09 65.9 130 33.8
Phvul.007G171333 Phaseolus vulgaris HOM05D001604 ORTHO05D001432 4.0e-09 65.5 77 40.3
PGR119G0019 Punica granatum HOM05D001604 ORTHO05D001432 4.0e-09 65.5 76 40.8
TAR633G0916 Trochodendron aralioides HOM05D001604 ORTHO05D001432 4.0e-09 65.5 76 40.8
VMungo0720G2502 Vigna mungo HOM05D001604 ORTHO05D001432 4.0e-09 65.5 77 40.3
Glyma.02G147800 Glycine max HOM05D001604 ORTHO05D001432 8.9e-09 64.3 76 39.5
Potri.005G208600 Populus trichocarpa HOM05D001604 ORTHO05D001432 8.9e-09 64.3 76 39.5
Actinidia09144 Actinidia chinensis HOM05D001604 ORTHO05D001432 1.2e-08 63.9 89 36.0
Cfa006131 Carpinus fangiana HOM05D001604 ORTHO05D001432 1.2e-08 63.9 97 35.1
Lj5g0022580 Lotus japonicus HOM05D001604 ORTHO05D001432 1.2e-08 63.9 77 37.7
Mapoly0028s0060 Marchantia polymorpha HOM05D024012 ORTHO05D252990 1.2e-08 63.9 88 37.5
Sabra05G0158700 Salix brachista HOM05D001604 ORTHO05D001432 1.2e-08 63.9 76 42.1
TWI59G0241 Tripterygium wilfordii HOM05D001604 ORTHO05D001432 1.2e-08 63.9 77 41.6
Ca_09761_v3 Cicer arietinum L. HOM05D001604 ORTHO05D001432 1.5e-08 63.5 77 39.0
Haze_04720 Corylus avellana HOM05D001604 ORTHO05D001432 1.5e-08 63.5 97 35.1
Eucgr.H01487 Eucalyptus grandis HOM05D001604 ORTHO05D001432 1.5e-08 63.5 76 39.5
Sc05g0004930 Simmondsia chinensis HOM05D001604 ORTHO05D001432 1.5e-08 63.5 76 36.8
RcHm_v2.0_Chr6g0291161 Rosa chinensis HOM05D001604 ORTHO05D001432 2.0e-08 63.2 70 41.4
Atru.chr5.1424 Acer truncatum HOM05D001604 ORTHO05D001432 2.6e-08 62.8 76 40.8
Actinidia00747 Actinidia chinensis HOM05D001604 ORTHO05D001432 2.6e-08 62.8 83 37.3
CARHR260810 Cardamine hirsuta HOM05D001604 ORTHO05D001432 2.6e-08 62.8 76 35.5
FvH4_2g23700 Fragaria vesca HOM05D001604 ORTHO05D001432 2.6e-08 62.8 70 41.4
FAN15G1006 Fragaria x ananassa HOM05D001604 ORTHO05D001432 2.6e-08 62.8 70 41.4
FAN20G2337 Fragaria x ananassa HOM05D001604 ORTHO05D001432 2.6e-08 62.8 70 41.4
FAN24G1029 Fragaria x ananassa HOM05D001604 ORTHO05D001432 2.6e-08 62.8 70 41.4
FAN27G3083 Fragaria x ananassa HOM05D001604 ORTHO05D001432 2.6e-08 62.8 70 41.4
QL12p022039 Quercus lobata HOM05D001604 ORTHO05D001432 2.6e-08 62.8 76 40.8
Sed0014653 Sechium edule HOM05D001604 ORTHO05D001432 3.4e-08 62.4 76 36.8
COL.COLO4_09107 Corchorus olitorius HOM05D001604 ORTHO05D001432 4.4e-08 62.0 76 40.8
CsaV3_6G037080 Cucumis sativus L. HOM05D001604 ORTHO05D001432 4.4e-08 62.0 76 35.5
Glyma.10G026000 Glycine max HOM05D001604 ORTHO05D001432 4.4e-08 62.0 76 38.2
TWI14G1132 Tripterygium wilfordii HOM05D001604 ORTHO05D001432 5.8e-08 61.6 76 36.8
arahy.Tifrunner.gnm1.ann1.26781N Arachis hypogaea HOM05D001604 ORTHO05D001432 7.5e-08 61.2 76 40.8
MD03G1266300 Malus domestica HOM05D001604 ORTHO05D001432 7.5e-08 61.2 70 41.4
MD11G1286900 Malus domestica HOM05D001604 ORTHO05D001432 7.5e-08 61.2 70 41.4
ATR0626G179 Amborella trichopoda HOM05D001604 ORTHO05D001432 9.8e-08 60.8 75 36.0
Cpa.g.sc52.26 Carica papaya HOM05D001604 ORTHO05D001432 9.8e-08 60.8 81 38.3
CiPaw.07G092400 Carya illinoinensis HOM05D001604 ORTHO05D001432 9.8e-08 60.8 76 35.5
DCAR_002739 Daucus carota HOM05D001604 ORTHO05D001432 9.8e-08 60.8 76 36.8
Dinv32944 Davidia involucrata HOM05D001604 ORTHO05D001432 9.8e-08 60.8 76 38.2
Aqoxy2G03301 Aquilegia oxysepala HOM05D001604 ORTHO05D001432 1.3e-07 60.5 70 37.1
CiPaw.08G104800 Carya illinoinensis HOM05D001604 ORTHO05D001432 1.3e-07 60.5 76 38.2
Nn1g02196 Nelumbo nucifera HOM05D001604 ORTHO05D001432 1.3e-07 60.5 94 35.1
GSVIVG01011123001 Vitis vinifera HOM05D001604 ORTHO05D001432 1.3e-07 60.5 95 31.6
Lalb_Chr21g0306491 Lupinus albus HOM05D001604 ORTHO05D001432 1.7e-07 60.1 77 37.7
Medtr1g072320 Medicago truncatula HOM05D001604 ORTHO05D001432 1.7e-07 60.1 77 36.4
Peaxi162Scf00338g00912 Petunia axillaris HOM05D001604 ORTHO05D001432 1.7e-07 60.1 76 38.2
TAR636G3424 Trochodendron aralioides HOM05D001604 ORTHO05D001432 1.7e-07 60.1 76 39.5
CDE01G0345 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 35.5
CDE12G0719 Ceratophyllum demersum HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 35.5
Ciclev10019118m.g Citrus clementina HOM05D001604 ORTHO05D001432 2.2e-07 59.7 70 38.6
Gohir.D11G127600 Gossypium hirsutum HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 36.8
Gorai.007G136400 Gossypium raimondii HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 36.8
Os07g0211500 Oryza sativa ssp. japonica HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 39.5
THA.LOC104817624 Tarenaya hassleriana HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 35.5
TAR365G0648 Trochodendron aralioides HOM05D001604 ORTHO05D001432 2.2e-07 59.7 76 39.5
CANSAT25G1330 Cannabis sativa HOM05D001604 ORTHO05D001432 2.9e-07 59.3 76 35.5
Glyma.19G155300 Glycine max HOM05D001604 ORTHO05D001432 4.9e-07 58.5 77 32.5
AL6G43450 Arabidopsis lyrata HOM05D001604 ORTHO05D001432 8.3e-07 57.8 76 34.2
AT4G09820 Arabidopsis thaliana HOM05D001604 ORTHO05D001432 8.3e-07 57.8 76 34.2
Potri.002G054100 Populus trichocarpa HOM05D001604 ORTHO05D001432 8.3e-07 57.8 76 35.5
Migut.D00287 Erythranthe guttata HOM05D001604 ORTHO05D001432 1.1e-06 57.4 81 35.8
VMungo1383G0857 Vigna mungo HOM05D001604 ORTHO05D001432 1.1e-06 57.4 77 35.1
Glyma.03G152800 Glycine max HOM05D001604 ORTHO05D001432 1.4e-06 57.0 77 32.5
arahy.Tifrunner.gnm1.ann1.HM1IVV Arachis hypogaea HOM05D001604 ORTHO05D001432 1.9e-06 56.6 77 36.4
Prupe.8G242100 Prunus persica HOM05D001604 ORTHO05D001432 1.9e-06 56.6 70 40.0
PGR119G1112 Punica granatum HOM05D001604 ORTHO05D001432 2.4e-06 56.2 81 35.8
TPR.G9117 Trifolium pratense HOM05D001604 ORTHO05D001432 2.4e-06 56.2 77 35.1
Aa31LG1G29520 Aethionema arabicum HOM05D001604 ORTHO05D001432 3.2e-06 55.8 76 36.8
Lj2C1174T10 Lonicera japonica HOM05D001604 ORTHO05D001432 3.2e-06 55.8 70 38.6
SEGI_26060 Sequoiadendron giganteum HOM05D001604 ORTHO05D001432 3.2e-06 55.8 76 34.2
Carub.0006s2828 Capsella rubella HOM05D001604 ORTHO05D001432 4.1e-06 55.5 76 34.2
Thhalv10028584m.g Eutrema salsugineum HOM05D001604 ORTHO05D001432 4.1e-06 55.5 76 34.2
Nitab4.5_0001028g0030 Nicotiana tabacum HOM05D001604 ORTHO05D001432 4.1e-06 55.5 76 36.8
HanXRQChr17g0555871 Helianthus annuus HOM05D001604 ORTHO05D001432 5.4e-06 55.1 70 34.3
SEGI_31869 Sequoiadendron giganteum HOM05D000567 ORTHO05D000767 7.0e-06 54.7 75 37.3
PGSC0003DMG400012891 Solanum tuberosum HOM05D001604 ORTHO05D001432 7.0e-06 54.7 76 35.5
BolC7t43553H Brassica oleracea HOM05D000567 ORTHO05D000767 9.2e-06 54.3 87 35.6
Gohir.A11G122300 Gossypium hirsutum HOM05D001604 ORTHO05D001432 9.2e-06 54.3 83 36.1
MBI19_g42513_MAGBIO Magnolia biondii HOM05D001604 ORTHO05D001432 9.2e-06 54.3 72 34.7
Oeu047878.1 Olea europaea HOM05D001604 ORTHO05D001432 9.2e-06 54.3 76 32.9
Sopen09g026820 Solanum pennellii HOM05D001604 ORTHO05D001432 9.2e-06 54.3 76 34.2


User provided reference genes

Program Settings