Gene: AT4G09820

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G09820
  • Transcript Identifier AT4G09820.1
  • Gene Type Coding gene
  • Location Chr4 : 6182067-6186261 : positive

Gene Family Information

  • ID HOM05D001604
  • #Genes/#Species 401/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G09820.1
  • symbol TT8
  • Alias AtTT8,BHLH42
  • full_name TRANSPARENT TESTA 8
  • uniprot Q9FT81

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description TRANSPARENT TESTA 8 (TT8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome differentiation, regulation of flavonoid biosynthetic process, regulation of proanthocyanidin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, micropylar endosperm; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 2828 Blast hits to 2555 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 73; Plants - 2682; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009813
IEA
GOA Databaseflavonoid biosynthetic process
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0048316
IMP
Gene Ontologyseed development1
GO:0010214
IMP
Gene Ontologyseed coat development1
GO:0031542
IMP
Gene Ontologypositive regulation of anthocyanin biosynthetic process2
GO:0009867
IMP
Gene Ontologyjasmonic acid mediated signaling pathway2
GO:0010026
IMP
Gene Ontologytrichome differentiation3
GO:2000029
IEP
Gene Ontologyregulation of proanthocyanidin biosynthetic process4
GO:0009962
TAS
Gene Ontologyregulation of flavonoid biosynthetic process5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000976
IDA, IPI
Gene Ontologytranscription cis-regulatory region binding1
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR025610 Transcription factor MYC/MYB N-terminal
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)