Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.4e-93 346.3 175 100.0
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-33 146.4 114 76.3
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-22 110.5 99 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.3e-22 107.8 102 60.8
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.1e-21 104.8 90 64.4
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.2e-20 104.0 102 58.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.6e-20 102.1 114 56.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.7e-19 100.1 108 52.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.1e-18 97.4 131 46.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-18 97.1 98 55.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.5e-18 97.1 102 52.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.9e-18 96.7 149 41.6
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.9e-18 96.7 102 55.9
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.5e-18 96.3 98 55.1
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.5e-18 96.3 149 40.3
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.5e-18 96.3 102 55.9
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.3e-18 95.9 138 44.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.3e-18 95.5 149 39.6
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 4.3e-18 95.5 102 53.9
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.3e-18 95.5 102 53.9
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.3e-18 95.5 102 53.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.6e-18 95.1 149 40.9
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 7.3e-18 94.7 102 54.9
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.5e-18 94.4 102 52.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.6e-17 93.6 102 50.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.6e-17 93.6 102 52.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.6e-17 93.6 102 52.0
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.6e-17 93.6 102 52.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.1e-17 93.2 149 40.3
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.1e-17 93.2 102 52.9
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.1e-17 93.2 92 51.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.8e-17 92.8 92 51.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-17 92.4 149 40.3
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-17 92.4 149 40.3
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.6e-17 92.4 102 51.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 3.6e-17 92.4 92 52.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 3.6e-17 92.4 92 51.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.7e-17 92.0 108 48.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.7e-17 92.0 102 50.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 6.2e-17 91.7 149 40.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 6.2e-17 91.7 92 52.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.2e-17 91.7 92 52.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 8.1e-17 91.3 102 49.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 8.1e-17 91.3 102 49.0
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 8.1e-17 91.3 102 52.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.1e-16 90.9 127 46.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.1e-16 90.9 102 52.9
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.1e-16 90.9 102 52.9
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.4e-16 90.5 102 49.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.4e-16 90.5 102 51.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.4e-16 90.5 109 47.7
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.4e-16 90.5 108 47.2
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.4e-16 90.5 102 49.0
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.4e-16 90.5 124 44.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.8e-16 90.1 102 50.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.8e-16 90.1 149 38.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.8e-16 90.1 102 51.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.8e-16 90.1 92 48.9
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.3e-16 89.7 92 54.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 3.1e-16 89.4 102 50.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 3.1e-16 89.4 102 50.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.1e-16 89.4 102 50.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.0e-16 89.0 102 50.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 5.2e-16 88.6 102 50.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.2e-16 88.6 102 50.0
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.2e-16 88.6 102 49.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.2e-16 88.6 102 50.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 6.8e-16 88.2 102 50.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 6.8e-16 88.2 102 48.0
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 8.9e-16 87.8 102 50.0
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.9e-16 87.8 102 50.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 8.9e-16 87.8 102 49.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 50.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 50.0
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 50.0
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 50.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 49.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 50.0
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 51.0
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-15 87.4 102 48.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.5e-15 87.0 102 49.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.5e-15 87.0 102 49.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.5e-15 87.0 129 47.3
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.5e-15 87.0 102 49.0
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.5e-15 87.0 102 50.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.0e-15 86.7 102 48.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.0e-15 86.7 89 53.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.6e-15 86.3 102 50.0
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.6e-15 86.3 89 52.8
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.6e-15 86.3 102 49.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.6e-15 86.3 102 49.0
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.6e-15 86.3 133 43.6
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.4e-15 85.9 102 49.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.4e-15 85.5 102 49.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.4e-15 85.5 102 48.0
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.4e-15 85.5 102 48.0
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 5.8e-15 85.1 102 49.0
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.8e-15 85.1 102 48.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 7.6e-15 84.7 102 49.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 7.6e-15 84.7 138 41.3
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 9.9e-15 84.3 108 45.4
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 9.9e-15 84.3 84 57.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 9.9e-15 84.3 87 52.9
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 9.9e-15 84.3 102 48.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 9.9e-15 84.3 109 45.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.7e-14 83.6 102 48.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.2e-14 83.2 99 48.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-14 83.2 99 49.5
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.9e-14 82.8 102 46.1
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.9e-14 82.8 102 48.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.9e-14 82.8 102 48.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.9e-14 82.8 105 46.7
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 3.7e-14 82.4 102 46.1
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 6.4e-14 81.6 102 48.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 46.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.4e-13 80.5 102 48.0
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-13 79.3 102 45.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.2e-13 79.3 102 45.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.1e-13 78.2 93 45.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.6e-12 75.5 56 66.1
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.0e-11 74.3 54 68.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.7e-11 73.6 84 48.8
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.9e-11 72.4 85 50.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.5e-10 69.7 54 64.8


User provided reference genes

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