Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0034 Selaginella moellendorffii HOM05D012794 ORTHO05D017318 6.0e-174 614.0 293 100.0
AagrBONN_evm.TU.Sc2ySwM_362.576 Anthoceros agrestis HOM05D012794 ORTHO05D017318 7.4e-124 447.6 293 69.3
Mapoly0055s0096 Marchantia polymorpha HOM05D012794 ORTHO05D017318 1.0e-117 427.2 293 64.2
Pp3c16_25560 Physcomitrium patens HOM05D012794 ORTHO05D017318 1.7e-88 330.1 208 68.3
Pp3c16_25571 Physcomitrium patens HOM05D012794 ORTHO05D017318 1.7e-88 330.1 208 68.3
CBR_g3290 Chara braunii HOM05D012794 ORTHO05D017318 1.8e-85 320.1 303 48.2
PRCOL_00003704 Prasinoderma coloniale HOM05D012794 ORTHO05D017318 9.2e-82 307.8 319 44.5
Cre12.g520950 Chlamydomonas reinhardtii HOM05D012794 ORTHO05D017318 2.3e-77 293.1 309 45.3
MCO01G077 Micromonas commoda HOM05D012794 ORTHO05D017318 2.1e-57 226.9 300 38.7
Cre12.g536550 Chlamydomonas reinhardtii HOM05D012794 ORTHO05D028758 3.5e-57 226.1 297 39.1
CBR_g56035 Chara braunii HOM05D012794 ORTHO05D028758 2.8e-54 216.5 296 37.8
PRCOL_00000101 Prasinoderma coloniale HOM05D012794 ORTHO05D028758 1.4e-50 204.1 296 35.1
MCO15G527 Micromonas commoda HOM05D012794 ORTHO05D028758 2.4e-50 203.4 296 36.8
Cre12.g506000 Chlamydomonas reinhardtii HOM05D020880 ORTHO05D013717 1.5e-23 114.4 299 27.1
PRCOL_00000409 Prasinoderma coloniale HOM05D020880 ORTHO05D013717 6.9e-21 105.5 297 24.2
Cfa024144 Carpinus fangiana HOM05D020880 ORTHO05D013717 4.5e-20 102.8 350 26.6
MCO03G594 Micromonas commoda HOM05D020880 ORTHO05D013717 1.2e-17 94.7 262 25.2
AagrBONN_evm.TU.Sc2ySwM_368.2163 Anthoceros agrestis HOM05D023138 ORTHO05D019631 2.0e-12 77.4 238 26.9
AagrBONN_evm.TU.Sc2ySwM_368.2239 Anthoceros agrestis HOM05D014295 ORTHO05D013717 7.9e-09 65.5 360 21.4
Peaxi162Scf00317g00616 Petunia axillaris HOM05D002410 ORTHO05D018078 5.1e-08 62.8 174 27.6
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 6.7e-08 62.4 174 25.3
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 8.8e-08 62.0 174 25.3
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 3.3e-07 60.1 138 29.0
Lalb_Chr12g0209011 Lupinus albus HOM05D000347 ORTHO05D001997 4.4e-07 59.7 121 30.6
Ah.11g043720 Amaranthus hybridus HOM05D000347 ORTHO05D001997 5.7e-07 59.3 121 32.2
Thhalv10013638m.g Eutrema salsugineum HOM05D000347 ORTHO05D001997 7.4e-07 58.9 121 31.4
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 7.4e-07 58.9 118 28.8
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 7.4e-07 58.9 226 23.5
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 7.4e-07 58.9 171 25.7
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 9.7e-07 58.5 111 29.7
Cpa.g.sc41.39 Carica papaya HOM05D000347 ORTHO05D001997 9.7e-07 58.5 121 31.4
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.3e-06 58.2 121 31.4
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.3e-06 58.2 121 31.4
CiPaw.14G013900 Carya illinoinensis HOM05D000347 ORTHO05D001997 1.7e-06 57.8 121 29.8
Ca_18258_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 1.7e-06 57.8 121 30.6
Lj9C312G3 Lonicera japonica HOM05D000347 ORTHO05D001997 1.7e-06 57.8 121 28.9
TPR.G2951 Trifolium pratense HOM05D000347 ORTHO05D001997 1.7e-06 57.8 121 29.8
TWI14G0713 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 1.7e-06 57.8 121 31.4
Atru.chr11.1239 Acer truncatum HOM05D000347 ORTHO05D001997 2.2e-06 57.4 121 30.6
Aqoxy1G01573 Aquilegia oxysepala HOM05D000347 ORTHO05D001997 2.2e-06 57.4 121 31.4
Ciclev10020286m.g Citrus clementina HOM05D000347 ORTHO05D001997 2.2e-06 57.4 121 29.8
SGA_v2.0_scaffold110G31280 Striga asiatica HOM05D000347 ORTHO05D001997 2.2e-06 57.4 121 29.8
Zm00001eb050680 Zea mays HOM05D000347 ORTHO05D001997 2.2e-06 57.4 121 32.2
Aa31LG11G20 Aethionema arabicum HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 31.4
MSTRG.16536 Avicennia marina HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 29.8
Glyma.05G131200 Glycine max HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
Glyma.08G085900 Glycine max HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
Manes.05G060600 Manihot esculenta HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
Phvul.002G191500 Phaseolus vulgaris HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
Potri.014G179700 Populus trichocarpa HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 29.8
Sc23g0005150 Simmondsia chinensis HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
THA.LOC104826753 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
VMungo0251G3769 Vigna mungo HOM05D000347 ORTHO05D001997 2.8e-06 57.0 121 30.6
AL8G34330 Arabidopsis lyrata HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 30.6
AT5G58230 Arabidopsis thaliana HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 30.6
EL10Ac2g03733 Beta vulgaris HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 31.4
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 3.7e-06 56.6 111 28.8
CARHR272030 Cardamine hirsuta HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 29.8
CiPaw.13G019800 Carya illinoinensis HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 29.8
Eucgr.D01137 Eucalyptus grandis HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 29.8
Gohir.D13G013100 Gossypium hirsutum HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 29.8
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 3.7e-06 56.6 110 28.2
unitig_52.g17434 Utricularia gibba HOM05D000347 ORTHO05D001997 3.7e-06 56.6 121 30.6
C02p13490 Brassica napus HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 28.9
BolC2t07461H Brassica oleracea HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 28.9
CANSAT35G1460 Cannabis sativa HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
ClCG05G002740 Citrullus lanatus HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
Cc02_g22240 Coffea canephora HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
MELO3C006243.2 Cucumis melo HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
CsaV3_3G010230 Cucumis sativus L. HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
Duzib106G1861 Durio zibethinus HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 28.9
MD02G1228600 Malus domestica HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 28.9
Os03g0640100 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 30.6
Prupe.2G110700 Prunus persica HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
PGR083G0589 Punica granatum HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
Sabra02G0168500 Salix brachista HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 28.9
Sp6g19890 Schrenkiella parvula HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 30.6
Sed0020879 Sechium edule HOM05D000347 ORTHO05D001997 4.8e-06 56.2 121 29.8
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 4.8e-06 56.2 171 25.1
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 4.8e-06 56.2 164 24.4
Duzib128G0635 Durio zibethinus HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 28.9
Gohir.A13G012000 Gossypium hirsutum HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 28.9
Gorai.013G014000 Gossypium raimondii HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 28.9
Lj4g0023238 Lotus japonicus HOM05D000347 ORTHO05D001997 6.3e-06 55.8 122 29.5
Manes.11G162700 Manihot esculenta HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 29.8
SalBow5G1135 Salvia bowleyana HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 29.8
TWI23G0290 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 6.3e-06 55.8 121 29.8
Actinidia39058 Actinidia chinensis HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 28.9
Carub.0008s1877 Capsella rubella HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 30.6
Lalb_Chr07g0188551 Lupinus albus HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 29.8
MD07G1083900 Malus domestica HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 28.9
SHI10568 Sapria himalayana HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 29.8
Hund03282 Selenicereus undatus HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 29.8
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 8.2e-06 55.5 156 24.4
Zm00001eb218750 Zea mays HOM05D000347 ORTHO05D001997 8.2e-06 55.5 121 30.6


User provided reference genes

Program Settings