Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO144G0089 Selaginella moellendorffii HOM05D003536 ORTHO05D004233 9.8e-122 440.3 242 100.0
PGR119G0635 Punica granatum HOM05D003536 ORTHO05D004233 7.9e-47 191.4 226 43.8
Prupe.4G214600 Prunus persica HOM05D003536 ORTHO05D004233 1.8e-46 190.3 227 44.5
MD03G1200000 Malus domestica HOM05D003536 ORTHO05D004233 2.3e-46 189.9 227 44.9
Sed0014057 Sechium edule HOM05D003536 ORTHO05D004233 2.3e-46 189.9 228 46.1
CANSAT11G2387 Cannabis sativa HOM05D003536 ORTHO05D004233 5.1e-46 188.7 228 44.3
Lj6g0024406 Lotus japonicus HOM05D003536 ORTHO05D004233 8.8e-46 188.0 244 41.0
arahy.Tifrunner.gnm1.ann1.3L4J3R Arachis hypogaea HOM05D003536 ORTHO05D004233 1.1e-45 187.6 245 43.3
TWI38G2316 Tripterygium wilfordii HOM05D003536 ORTHO05D004233 1.1e-45 187.6 224 45.1
MD11G1217000 Malus domestica HOM05D003536 ORTHO05D004233 2.0e-45 186.8 227 45.4
RcHm_v2.0_Chr5g0040091 Rosa chinensis HOM05D003536 ORTHO05D004233 2.0e-45 186.8 228 43.0
arahy.Tifrunner.gnm1.ann1.NDA9EK Arachis hypogaea HOM05D003536 ORTHO05D004233 3.3e-45 186.0 245 42.9
Duzib192G0083 Durio zibethinus HOM05D003536 ORTHO05D004233 3.3e-45 186.0 244 45.9
PSO648G0105 Papaver somniferum HOM05D003536 ORTHO05D004233 3.3e-45 186.0 225 45.3
CSS0046625 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 9.7e-45 184.5 228 44.7
SEGI_08171 Sequoiadendron giganteum HOM05D003536 ORTHO05D004233 9.7e-45 184.5 236 44.5
Medtr3g052210 Medicago truncatula HOM05D003536 ORTHO05D004233 1.7e-44 183.7 227 44.1
THA.LOC104812620 Tarenaya hassleriana HOM05D003536 ORTHO05D004233 1.7e-44 183.7 226 43.8
MSTRG.15254 Avicennia marina HOM05D003536 ORTHO05D004233 2.8e-44 183.0 228 43.4
CsaV3_6G006300 Cucumis sativus L. HOM05D003536 ORTHO05D004233 2.8e-44 183.0 227 45.4
Glyma.14G023200 Glycine max HOM05D003536 ORTHO05D004233 3.7e-44 182.6 243 42.0
Gorai.006G088600 Gossypium raimondii HOM05D003536 ORTHO05D004233 3.7e-44 182.6 226 42.5
Lalb_Chr04g0248391 Lupinus albus HOM05D003536 ORTHO05D004233 3.7e-44 182.6 245 40.8
Atru.chr11.1823 Acer truncatum HOM05D003536 ORTHO05D004233 4.8e-44 182.2 227 44.5
MELO3C022490.2 Cucumis melo HOM05D003536 ORTHO05D004233 4.8e-44 182.2 227 44.9
Glyma.18G096200 Glycine max HOM05D003536 ORTHO05D004233 4.8e-44 182.2 245 40.4
Gohir.A10G028700 Gossypium hirsutum HOM05D003536 ORTHO05D004233 4.8e-44 182.2 239 41.0
PSO339G1992 Papaver somniferum HOM05D003536 ORTHO05D004233 4.8e-44 182.2 225 44.4
Potri.004G050800 Populus trichocarpa HOM05D003536 ORTHO05D004233 4.8e-44 182.2 227 44.5
Rhsim02G0085700 Rhododendron simsii HOM05D003536 ORTHO05D004233 4.8e-44 182.2 228 44.7
TAR629G2543 Trochodendron aralioides HOM05D003536 ORTHO05D004233 6.3e-44 181.8 230 41.7
Duzib235G0074 Durio zibethinus HOM05D003536 ORTHO05D004233 8.2e-44 181.4 225 44.4
Phvul.008G267900 Phaseolus vulgaris HOM05D003536 ORTHO05D004233 8.2e-44 181.4 244 39.3
Gohir.D09G073600 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.1e-43 181.0 226 42.0
Potri.011G059700 Populus trichocarpa HOM05D003536 ORTHO05D004233 1.1e-43 181.0 227 44.1
Migut.L00733 Erythranthe guttata HOM05D003536 ORTHO05D004233 1.4e-43 180.6 229 43.2
Migut.L00928 Erythranthe guttata HOM05D003536 ORTHO05D004233 1.4e-43 180.6 229 43.2
Thecc.06G179100 Theobroma cacao HOM05D003536 ORTHO05D004233 1.4e-43 180.6 223 43.5
TPR.G33765 Trifolium pratense HOM05D003536 ORTHO05D004233 1.4e-43 180.6 227 44.1
HanXRQChr15g0493141 Helianthus annuus HOM05D003536 ORTHO05D004233 2.4e-43 179.9 224 42.4
unitig_37.g12355 Utricularia gibba HOM05D003536 ORTHO05D004233 2.4e-43 179.9 226 41.6
Carub.0001s2696 Capsella rubella HOM05D003536 ORTHO05D004233 3.1e-43 179.5 226 41.6
CiPaw.11G159200 Carya illinoinensis HOM05D003536 ORTHO05D004233 3.1e-43 179.5 231 43.7
ECA238G2064 Erigeron canadensis HOM05D003536 ORTHO05D004233 3.1e-43 179.5 227 41.4
Lalb_Chr15g0081251 Lupinus albus HOM05D003536 ORTHO05D004233 5.3e-43 178.7 245 39.2
VMungo0647G0941 Vigna mungo HOM05D003536 ORTHO05D004233 5.3e-43 178.7 226 42.5
Glyma.08G316900 Glycine max HOM05D003536 ORTHO05D004233 6.9e-43 178.3 245 40.0
AL1G42100 Arabidopsis lyrata HOM05D003536 ORTHO05D004233 9.1e-43 177.9 226 41.6
AT1G28490 Arabidopsis thaliana HOM05D003536 ORTHO05D004233 9.1e-43 177.9 226 41.6
Gohir.A09G074000 Gossypium hirsutum HOM05D003536 ORTHO05D004233 9.1e-43 177.9 226 42.0
Sed0001901 Sechium edule HOM05D003536 ORTHO05D004233 9.1e-43 177.9 227 43.2
CARHR027980 Cardamine hirsuta HOM05D003536 ORTHO05D004233 1.2e-42 177.6 226 42.0
Dinv05292 Davidia involucrata HOM05D003536 ORTHO05D004233 1.5e-42 177.2 222 42.8
Aqoxy6G01555 Aquilegia oxysepala HOM05D003536 ORTHO05D004233 2.0e-42 176.8 233 42.5
C07p16800 Brassica napus HOM05D003536 ORTHO05D004233 2.0e-42 176.8 226 41.2
BraA08t34499Z Brassica rapa HOM05D003536 ORTHO05D004233 2.0e-42 176.8 226 41.2
Eucgr.J00643 Eucalyptus grandis HOM05D003536 ORTHO05D004233 2.0e-42 176.8 227 42.3
Mapoly0079s0013 Marchantia polymorpha HOM05D003536 ORTHO05D004233 2.0e-42 176.8 246 40.2
Medtr5g092870 Medicago truncatula HOM05D003536 ORTHO05D004233 2.0e-42 176.8 232 41.4
GSVIVG01038187001 Vitis vinifera HOM05D003536 ORTHO05D004233 2.0e-42 176.8 228 42.5
BcaB03g12101 Brassica carinata HOM05D003536 ORTHO05D004233 2.6e-42 176.4 226 41.2
BcaC01g00063 Brassica carinata HOM05D003536 ORTHO05D004233 2.6e-42 176.4 226 41.2
A07p11150 Brassica napus HOM05D003536 ORTHO05D004233 2.6e-42 176.4 226 41.2
Cc03_g14490 Coffea canephora HOM05D003536 ORTHO05D004233 2.6e-42 176.4 231 43.7
COL.COLO4_31399 Corchorus olitorius HOM05D003536 ORTHO05D004233 2.6e-42 176.4 207 46.4
Glyma.02G291600 Glycine max HOM05D003536 ORTHO05D004233 2.6e-42 176.4 241 40.2
Gohir.D05G160800 Gossypium hirsutum HOM05D003536 ORTHO05D004233 2.6e-42 176.4 223 43.0
EL10Ac2g03342 Beta vulgaris HOM05D003536 ORTHO05D004233 3.4e-42 176.0 223 41.3
Thhalv10008609m.g Eutrema salsugineum HOM05D003536 ORTHO05D004233 3.4e-42 176.0 226 40.7
LjContig00272g0022132 Lotus japonicus HOM05D003536 ORTHO05D004233 3.4e-42 176.0 240 39.6
QL01p015305 Quercus lobata HOM05D003536 ORTHO05D004233 3.4e-42 176.0 228 42.5
Aqoxy1G04249 Aquilegia oxysepala HOM05D003536 ORTHO05D004233 4.5e-42 175.6 244 41.0
BcaB07g32470 Brassica carinata HOM05D003536 ORTHO05D004233 4.5e-42 175.6 226 41.6
Gohir.D10G029100 Gossypium hirsutum HOM05D003536 ORTHO05D004233 4.5e-42 175.6 239 39.7
THA.LOC104820574 Tarenaya hassleriana HOM05D003536 ORTHO05D004233 4.5e-42 175.6 230 40.9
Lsat_1_v5_gn_9_58001 Lactuca sativa HOM05D003536 ORTHO05D004233 5.9e-42 175.3 227 40.5
Psat5g178600 Pisum sativum HOM05D003536 ORTHO05D004233 5.9e-42 175.3 227 42.7
TWI63G0523 Tripterygium wilfordii HOM05D003536 ORTHO05D004233 7.7e-42 174.9 224 41.5
Atru.chr2.3484 Acer truncatum HOM05D003536 ORTHO05D004233 1.0e-41 174.5 228 43.0
SGA_v2.0_scaffold189G40381 Striga asiatica HOM05D003536 ORTHO05D004233 1.0e-41 174.5 228 42.1
BcaC05g26899 Brassica carinata HOM05D003536 ORTHO05D004233 1.3e-41 174.1 230 41.7
A08p25480 Brassica napus HOM05D003536 ORTHO05D004233 1.3e-41 174.1 223 41.3
A09p37550 Brassica napus HOM05D003536 ORTHO05D004233 1.3e-41 174.1 230 41.7
Ciclev10009295m.g Citrus clementina HOM05D003536 ORTHO05D004233 1.3e-41 174.1 227 42.3
Aa31LG6G11010 Aethionema arabicum HOM05D003536 ORTHO05D004233 1.7e-41 173.7 248 39.5
C05p27490 Brassica napus HOM05D003536 ORTHO05D004233 1.7e-41 173.7 230 41.7
BolC5t31469H Brassica oleracea HOM05D003536 ORTHO05D004233 1.7e-41 173.7 230 41.7
FvH4_3g22850 Fragaria vesca HOM05D003536 ORTHO05D004233 1.7e-41 173.7 228 39.9
HanXRQChr14g0462891 Helianthus annuus HOM05D003536 ORTHO05D004233 1.7e-41 173.7 227 41.4
BcaB03g13924 Brassica carinata HOM05D003536 ORTHO05D004233 2.2e-41 173.3 231 40.3
SMO337G0082 Selaginella moellendorffii HOM05D003536 ORTHO05D004233 2.2e-41 173.3 242 40.1
CiPaw.12G113000 Carya illinoinensis HOM05D003536 ORTHO05D004233 3.8e-41 172.6 228 42.5
Pp3c3_31110 Physcomitrium patens HOM05D003536 ORTHO05D004233 3.8e-41 172.6 225 43.6
Manes.08G040100 Manihot esculenta HOM05D003536 ORTHO05D004233 5.0e-41 172.2 230 43.5
Nitab4.5_0006944g0020 Nicotiana tabacum HOM05D003536 ORTHO05D004233 5.0e-41 172.2 228 42.1
Sc12g0007550 Simmondsia chinensis HOM05D003536 ORTHO05D004233 5.0e-41 172.2 223 41.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.5e-41 171.4 224 43.3
FAN16G1068 Fragaria x ananassa HOM05D003536 ORTHO05D004233 8.5e-41 171.4 230 40.4
TPR.G1154 Trifolium pratense HOM05D003536 ORTHO05D004233 8.5e-41 171.4 244 40.2
Manes.09G040400 Manihot esculenta HOM05D003536 ORTHO05D004233 1.1e-40 171.0 228 42.1
Sabra11G0041300 Salix brachista HOM05D003536 ORTHO05D004233 1.1e-40 171.0 228 43.4
CSS0012110 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 1.4e-40 170.6 228 41.7
Migut.H00835 Erythranthe guttata HOM05D003536 ORTHO05D004233 1.4e-40 170.6 228 40.8
FAN21G1823 Fragaria x ananassa HOM05D003536 ORTHO05D004233 1.4e-40 170.6 228 39.0
Phvul.006G044400 Phaseolus vulgaris HOM05D003536 ORTHO05D004233 1.4e-40 170.6 243 38.7
Mapoly0140s0004 Marchantia polymorpha HOM05D003536 ORTHO05D004233 1.9e-40 170.2 235 41.7
Nn6g33747 Nelumbo nucifera HOM05D003536 ORTHO05D004233 1.9e-40 170.2 228 41.7
Psat2g011920 Pisum sativum HOM05D003536 ORTHO05D004233 2.5e-40 169.9 246 39.8
CAN.G1139.15 Capsicum annuum HOM05D003536 ORTHO05D004233 3.2e-40 169.5 228 41.2
TAR375G0806 Trochodendron aralioides HOM05D003536 ORTHO05D004233 5.5e-40 168.7 230 42.6
VMungo0540G1494 Vigna mungo HOM05D003536 ORTHO05D004233 5.5e-40 168.7 245 38.0
unitig_46.g18655 Utricularia gibba HOM05D003536 ORTHO05D004233 7.2e-40 168.3 226 41.6
Zm00001eb400730 Zea mays HOM05D003536 ORTHO05D004233 7.2e-40 168.3 222 41.0
MBI05_g13422_MAGBIO Magnolia biondii HOM05D003536 ORTHO05D004233 9.4e-40 167.9 231 38.1
Pp3c17_23220 Physcomitrium patens HOM05D003536 ORTHO05D004233 9.4e-40 167.9 223 43.9
DCAR_012946 Daucus carota HOM05D003536 ORTHO05D004233 1.6e-39 167.2 223 40.8
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.1e-39 166.8 210 42.9
Peaxi162Scf00341g00410 Petunia axillaris HOM05D003536 ORTHO05D004233 2.7e-39 166.4 228 41.7
PGSC0003DMG400015457 Solanum tuberosum HOM05D003536 ORTHO05D004233 3.6e-39 166.0 228 41.7
Os01g0963300 Oryza sativa ssp. japonica HOM05D003536 ORTHO05D004233 4.7e-39 165.6 222 40.1
Solyc12g089150.2 Solanum lycopersicum HOM05D003536 ORTHO05D004233 4.7e-39 165.6 228 41.2
Zm00001eb140280 Zea mays HOM05D003536 ORTHO05D004233 4.7e-39 165.6 222 40.1
BolC3t19791H Brassica oleracea HOM05D003536 ORTHO05D004233 7.9e-39 164.9 244 38.1
Cfa019551 Carpinus fangiana HOM05D003536 ORTHO05D004233 7.9e-39 164.9 212 42.5
Os11g0168100 Oryza sativa ssp. japonica HOM05D003536 ORTHO05D004233 1.0e-38 164.5 223 39.0
Sopen12g031020 Solanum pennellii HOM05D003536 ORTHO05D004233 1.0e-38 164.5 228 41.2
CSS0007932 Camellia sinensis var. sinensis HOM05D003536 ORTHO05D004233 1.4e-38 164.1 228 41.7
Gohir.A05G158100 Gossypium hirsutum HOM05D003536 ORTHO05D004233 1.8e-38 163.7 214 43.0
RhsimUnG0015200 Rhododendron simsii HOM05D003536 ORTHO05D004233 3.0e-38 162.9 209 44.0
MCO15G081 Micromonas commoda HOM05D003536 ORTHO05D004233 6.7e-38 161.8 221 41.2
Nn1g00740 Nelumbo nucifera HOM05D003536 ORTHO05D004233 3.3e-37 159.5 213 41.3
Lsat_1_v5_gn_2_134160 Lactuca sativa HOM05D003536 ORTHO05D004233 7.4e-37 158.3 216 41.2
AUR62037629 Chenopodium quinoa HOM05D003536 ORTHO05D004233 2.8e-36 156.4 204 40.7
AUR62039177 Chenopodium quinoa HOM05D003536 ORTHO05D004233 4.8e-36 155.6 204 40.2
Oeu018052.1 Olea europaea HOM05D003536 ORTHO05D004233 4.8e-36 155.6 188 46.3
Oeu039254.1 Olea europaea HOM05D003536 ORTHO05D004233 6.3e-36 155.2 209 41.1
Ca_06324_v3 Cicer arietinum L. HOM05D003536 ORTHO05D004233 8.2e-36 154.8 244 36.9
Hund02378 Selenicereus undatus HOM05D003536 ORTHO05D004233 2.4e-35 153.3 206 41.3
Actinidia28974 Actinidia chinensis HOM05D003536 ORTHO05D004233 9.1e-35 151.4 228 39.0
DCAR_019273 Daucus carota HOM05D003536 ORTHO05D004233 4.5e-34 149.1 209 38.8
C03p75320 Brassica napus HOM05D003536 ORTHO05D004233 7.7e-34 148.3 226 37.6
Duzib160G0652 Durio zibethinus HOM05D003536 ORTHO05D004233 1.0e-33 147.9 172 46.5
Cre06.g290100 Chlamydomonas reinhardtii HOM05D003536 ORTHO05D004233 5.0e-33 145.6 223 38.6
AagrBONN_evm.TU.Sc2ySwM_344.813 Anthoceros agrestis HOM05D003536 ORTHO05D004233 6.5e-33 145.2 228 40.4
Gohir.A11G169750 Gossypium hirsutum HOM05D003536 ORTHO05D004233 6.5e-33 145.2 225 39.1
CDE04G1024 Ceratophyllum demersum HOM05D003536 ORTHO05D004233 1.1e-32 144.4 206 41.3
Gorai.009G166000 Gossypium raimondii HOM05D003536 ORTHO05D004233 2.5e-32 143.3 216 38.9
Gorai.011G031000 Gossypium raimondii HOM05D003536 ORTHO05D004233 2.5e-32 143.3 188 41.5
Dinv33222 Davidia involucrata HOM05D003536 ORTHO05D004233 1.2e-31 141.0 177 43.5
Haze_23535 Corylus avellana HOM05D003536 ORTHO05D004233 1.6e-31 140.6 212 38.7
HPP92_012149 Vanilla planifolia HOM05D003536 ORTHO05D004233 3.6e-31 139.4 184 42.4
Lalb_Chr15g0081231 Lupinus albus HOM05D003536 ORTHO05D004233 1.4e-30 137.5 192 40.6
Lalb_Chr15g0081241 Lupinus albus HOM05D003536 ORTHO05D004233 1.4e-30 137.5 192 40.6
ATR0681G197 Amborella trichopoda HOM05D003536 ORTHO05D004233 1.8e-30 137.1 177 44.1
BolC7t42188H Brassica oleracea HOM05D003536 ORTHO05D004233 3.0e-30 136.3 174 42.5
vmacro15697 Vaccinium macrocarpon HOM05D003536 ORTHO05D004233 4.0e-30 136.0 180 43.9
BraA09t39265Z Brassica rapa HOM05D003536 ORTHO05D004233 6.7e-30 135.2 179 43.0
BraA07t28906Z Brassica rapa HOM05D003536 ORTHO05D004233 2.0e-29 133.7 174 42.0
CBR_g4120 Chara braunii HOM05D003536 ORTHO05D004233 2.0e-29 133.7 284 32.0
Haze_09311 Corylus avellana HOM05D003536 ORTHO05D004233 2.0e-29 133.7 203 38.9
Cpa.g.sc7.5 Carica papaya HOM05D003536 ORTHO05D004233 7.5e-29 131.7 222 37.4
FAN25G2670 Fragaria x ananassa HOM05D003536 ORTHO05D004233 9.7e-29 131.3 232 33.2
SGA_v2.0_scaffold20G08963 Striga asiatica HOM05D003536 ORTHO05D004233 1.1e-27 127.9 253 32.0
ClCG06G000520 Citrullus lanatus HOM05D003536 ORTHO05D004233 2.7e-26 123.2 221 37.1
Sp1g24750 Schrenkiella parvula HOM05D003536 ORTHO05D004233 7.7e-26 121.7 191 37.7
Gohir.A12G052800 Gossypium hirsutum HOM05D003536 ORTHO05D004233 4.2e-24 115.9 164 40.2
Gohir.A07G160875 Gossypium hirsutum HOM05D003536 ORTHO05D004233 2.1e-23 113.6 206 38.3
Lj2A346T41 Lonicera japonica HOM05D003536 ORTHO05D004233 2.7e-23 113.2 181 42.5
Gohir.A01G165866 Gossypium hirsutum HOM05D003536 ORTHO05D004233 2.6e-21 106.7 188 37.2
QL08p025878 Quercus lobata HOM05D003536 ORTHO05D004233 2.6e-21 106.7 157 38.9
Nitab4.5_0000151g0150 Nicotiana tabacum HOM05D003536 ORTHO05D004233 1.1e-19 101.3 156 39.1
vmacro02467 Vaccinium macrocarpon HOM05D003536 ORTHO05D004233 3.1e-19 99.8 158 40.5
QL01p015314 Quercus lobata HOM05D003536 ORTHO05D004233 1.3e-17 94.4 214 29.0
QL08p025876 Quercus lobata HOM05D003536 ORTHO05D004233 4.2e-16 89.4 73 58.9
BcaC06g35375 Brassica carinata HOM05D003536 ORTHO05D004233 7.2e-16 88.6 93 40.9
Hma1.2p1_0264F.1_g106110 Hydrangea macrophylla HOM05D003536 ORTHO05D004233 1.8e-14 84.0 99 39.4
Pp3c12_22240 Physcomitrium patens HOM05D003536 ORTHO05D004233 5.2e-14 82.4 88 44.3
AagrBONN_evm.TU.Sc2ySwM_228.1817 Anthoceros agrestis HOM05D003536 ORTHO05D004233 3.7e-12 76.3 114 38.6
Gohir.A10G196100 Gossypium hirsutum HOM05D003536 ORTHO05D004233 3.1e-11 73.2 96 38.5
PRCOL_00003132 Prasinoderma coloniale HOM05D003536 ORTHO05D004233 2.7e-10 70.1 133 34.6
Lsat_1_v5_gn_8_13220 Lactuca sativa HOM05D003536 ORTHO05D004233 1.7e-09 67.4 131 36.6
PRCOL_00002408 Prasinoderma coloniale HOM05D003536 ORTHO05D004233 1.9e-08 63.9 234 23.1
Lsat_1_v5_gn_4_133441 Lactuca sativa HOM05D003536 ORTHO05D004233 5.6e-08 62.4 161 31.7
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.6e-07 60.8 125 33.6
Nitab4.5_0015265g0010 Nicotiana tabacum HOM05D003536 ORTHO05D004233 2.3e-06 57.0 52 50.0


User provided reference genes

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