Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 1.7e-304 1048.5 511 100.0
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 7.4e-196 687.6 467 68.3
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 3.7e-195 685.3 470 67.2
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 2.0e-193 679.5 473 68.7
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 9.1e-186 654.1 470 63.8
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 2.0e-185 652.9 469 64.4
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 5.9e-185 651.4 473 64.7
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 7.7e-185 651.0 494 62.6
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 2.2e-184 649.4 480 62.7
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 5.0e-184 648.3 476 64.5
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 6.5e-184 647.9 493 61.7
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 1.1e-183 647.1 471 63.7
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 4.2e-183 645.2 480 62.5
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 4.2e-183 645.2 477 62.3
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.2e-182 643.7 480 62.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 1.6e-182 643.3 473 63.4
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.6e-182 643.3 481 62.4
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.7e-182 642.5 480 62.1
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.7e-182 642.5 466 63.5
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 2.7e-182 642.5 480 62.1
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 2.7e-182 642.5 470 63.4
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 3.6e-182 642.1 472 63.3
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 4.7e-182 641.7 466 63.3
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 8.0e-182 641.0 481 62.2
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.0e-181 640.6 480 61.9
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 1.4e-181 640.2 483 62.7
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.4e-181 640.2 471 63.5
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.4e-181 640.2 477 63.5
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.8e-181 639.8 472 62.9
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.0e-181 639.0 478 63.0
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 4.0e-181 638.6 480 62.7
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 5.2e-181 638.3 465 63.4
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 6.8e-181 637.9 470 63.2
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 6.8e-181 637.9 480 63.3
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 2.6e-180 636.0 473 63.0
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 3.4e-180 635.6 470 64.0
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 4.4e-180 635.2 478 61.7
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 4.4e-180 635.2 470 62.8
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 4.4e-180 635.2 470 62.1
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 5.7e-180 634.8 478 63.4
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 9.8e-180 634.0 481 61.7
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 9.8e-180 634.0 479 62.0
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 9.8e-180 634.0 481 62.0
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 1.3e-179 633.6 477 63.7
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.7e-179 633.3 481 61.7
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.7e-179 633.3 476 63.0
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 1.7e-179 633.3 469 62.3
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 2.8e-179 632.5 492 61.2
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 4.8e-179 631.7 494 60.5
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 6.3e-179 631.3 475 63.8
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 8.3e-179 630.9 473 63.8
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.1e-178 630.6 478 63.2
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 4.1e-178 628.6 469 62.9
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 7.0e-178 627.9 476 62.0
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 9.1e-178 627.5 482 61.4
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 3.5e-177 625.5 475 63.2
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 4.5e-177 625.2 476 61.3
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.2e-176 622.9 470 63.0
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 2.2e-176 622.9 470 62.6
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 3.8e-176 622.1 500 59.4
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 6.5e-176 621.3 483 62.1
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 1.1e-175 620.5 473 61.1
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.5e-175 620.2 475 61.1
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 9.5e-175 617.5 501 58.9
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 1.6e-174 616.7 470 61.1
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.6e-174 615.5 503 58.6
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 1.4e-173 613.6 478 60.3
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 1.8e-173 613.2 480 60.2
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.3e-173 612.8 503 60.2
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 8.8e-173 610.9 475 60.6
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 7.5e-172 607.8 531 56.9
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 8.3e-171 604.4 491 58.9
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 4.5e-169 598.6 508 57.3
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 3.8e-168 595.5 526 56.3
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 5.0e-168 595.1 447 63.5
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 5.7e-164 581.6 449 60.6
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 7.5e-164 581.3 550 53.5
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 9.8e-164 580.9 472 58.9
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 2.4e-162 576.2 502 57.0
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 7.0e-162 574.7 470 59.8
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 9.2e-162 574.3 517 56.1
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.3e-160 570.5 481 57.4
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 3.9e-160 568.9 460 59.3
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 6.6e-160 568.2 477 59.5
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 1.9e-159 566.6 530 54.0
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 2.5e-159 566.2 471 57.7
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.4e-157 560.5 430 61.4
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 2.0e-153 546.6 472 57.2
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 5.0e-152 542.0 478 57.5
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 2.1e-150 536.6 504 53.0
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 2.4e-146 523.1 491 53.0
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 5.6e-143 511.9 487 52.2
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 3.6e-142 509.2 480 56.5
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 2.1e-137 493.4 470 53.0
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 3.8e-131 472.6 387 59.4
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 1.1e-130 471.1 316 66.8
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 1.9e-130 470.3 383 59.5
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.2e-130 469.5 374 59.4
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 1.9e-127 460.3 464 52.4
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 1.6e-126 457.2 454 48.7
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 1.8e-125 453.8 387 57.1
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.3e-125 452.2 392 57.4
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 9.0e-125 451.4 473 49.3
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 9.9e-124 448.0 384 57.8
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.6e-116 423.3 403 52.9
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 1.3e-110 404.4 380 54.7
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.2e-107 393.7 240 72.5
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 6.5e-107 392.1 360 53.3
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.2e-105 387.9 295 63.7
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.5e-103 380.9 288 61.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.5e-95 353.6 342 53.2
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.5e-92 344.4 339 50.7
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 3.7e-86 323.2 343 48.4
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 2.4e-85 320.5 181 75.7
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.3e-67 261.5 149 77.2
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 4.2e-66 256.5 539 34.9
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 6.4e-46 189.5 94 83.0
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 3.5e-44 183.7 95 78.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.4e-29 134.4 82 69.5
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 3.2e-29 134.0 456 28.3
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 4.1e-29 133.7 67 79.1
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 4.1e-29 133.7 93 72.0
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 1.7e-27 128.3 97 57.7
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 8.6e-27 125.9 197 36.5
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.5e-20 104.0 88 56.8
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 2.8e-17 94.4 127 38.6
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 3.9e-11 73.9 71 52.1
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 4.5e-07 60.5 50 58.0


User provided reference genes

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